Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq290 102 2e-16 seq911 89.7 1e-12 >seq290 Length=35206 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || |||||||| | || ||||| || ||| | |||| Sbjct 14684 AAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCGGACTCGATCGACAAC 14743 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| ||||||||||| || ||||| || ||| ||| ||| | || |||||| Sbjct 14744 GTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCAGCAACGCCTGATCTTC 14803 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| || || | ||| || ||| |||||| ||||||| ||||| Sbjct 14804 GCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAACATCCAGAAGGAGTCG 14863 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 14864 ACGCTGCACCTGGT 14877 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || |||||||| | || ||||| || ||| | |||| Sbjct 14912 AAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCGGACTCGATCGACAAC 14971 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| ||||||||||| || ||||| || ||| ||| ||| | || |||||| Sbjct 14972 GTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCAGCAACGCCTGATCTTC 15031 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| || || | ||| || ||| |||||| ||||||| ||||| Sbjct 15032 GCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAACATCCAGAAGGAGTCG 15091 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 15092 ACGCTGCACCTGGT 15105 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || |||||||| | || ||||| || ||| | |||| Sbjct 15140 AAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCGGACTCGATCGACAAC 15199 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| ||||||||||| || ||||| || ||| ||| ||| | || |||||| Sbjct 15200 GTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCAGCAACGCCTGATCTTC 15259 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| || || | ||| || ||| |||||| ||||||| ||||| Sbjct 15260 GCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAACATCCAGAAGGAGTCG 15319 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || || || || | ||||| Sbjct 15320 ACGCTGCATCTGGTGCTGCGTCTTCG 15345 >seq911 Length=16908 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||| | |||| Sbjct 6000 AAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAAC 6059 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || || || || ||||| || ||| ||| || || | |||||| Sbjct 6060 GTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCAGCAGCGATTAATCTTC 6119 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || ||| || |||||| ||||||| ||||| Sbjct 6120 GCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAACATCCAGAAGGAGTCG 6179 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 6180 ACGCTGCACCTGGT 6193 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||| | |||| Sbjct 6228 AAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAAC 6287 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || || || || ||||| || ||| ||| || || | |||||| Sbjct 6288 GTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCAGCAGCGATTAATCTTC 6347 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || ||| || |||||| ||||||| ||||| Sbjct 6348 GCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAACATCCAGAAGGAGTCG 6407 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 6408 ACGCTGCACCTGGT 6421 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||| | |||| Sbjct 6456 AAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAAC 6515 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || || || || ||||| || ||| ||| || || | |||||| Sbjct 6516 GTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCAGCAGCGATTAATCTTC 6575 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || ||| || |||||| ||||||| ||||| Sbjct 6576 GCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAACATCCAGAAGGAGTCG 6635 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 6636 ACGCTGCACCTGGT 6649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181729553831946