Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq14 333 4e-85 seq173 208 1e-47 seq345 167 3e-35 seq72 158 2e-32 seq304 150 3e-30 seq652 118 2e-20 >seq14 Length=111874 Score = 333 bits (368), Expect = 4e-85 Identities = 442/601 (74%), Gaps = 16/601 (3%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||||||| | || || |||||||||||||| || || |||||||| | | || Sbjct 21311 CGAGCCGTTCCTTGTGGAGAACCCGAACCGCTTCGTGCTCTTCCCCATTCAGGAGCACGA 21370 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 | ||| | |||||| || ||||||||||| || |||||||| ||||||||| | |||| Sbjct 21371 CGTGTGGCAGATGTAC-AAGAAGGCCGAGGCTTCGTTTTGGACGGCCGAGGAGCTGGACC 21429 Query 1455835 TCGGCGC-CGAC---ACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATC 1455890 | || || |||| | || |||||| | || ||| ||||||| || ||| || Sbjct 21430 T-GGTGCACGACCTCAAGG---ACTGGGCGAACCTCTCGGACAACGAGCGTCACTTCGTC 21485 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 ||||| || ||||||||||| ||| ||||| ||||||||||| ||||||||||||| Sbjct 21486 AAGCATGTGCTCGCCTTTTT-CGCGGCCAGTGATGGCATCGTAAACGAGAACCTGGCCAT 21544 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 ||| | || || || || |||| ||||| || | || ||||| |||||||| || Sbjct 21545 GAACTTCAGCAACGAAGTGCAGGTGCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATTGC 21604 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 |||||| ||||||||||| || ||||||||| || || ||||| ||| |||||||| | Sbjct 21605 CATCGAGAACATCCACTCGGAGGTCTACTCGCTGCTCATTGACACGTACATCAAGGACGC 21664 Query 1456071 GGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | |||||||||||| | | || ||||| || || | |||| |||| ||| || || Sbjct 21665 CATTGAGAAGGACCACTTGCTGCGTGCCATTGAGACCATCCCGTGCGTGACGAAGAAAGC 21724 Query 1456131 CGACTGGGCGATGAAGTGGATC-AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGT 1456189 | ||||||| | |||||| | | | | | | | ||| || | | ||||| || | Sbjct 21725 CAACTGGGCACTCAAGTGGTGCGACCCACGTGTG--TCGTCA-TACCCGGAGCGTCTGCT 21781 Query 1456190 CGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248 | || ||| | || ||||||||||| ||||||||| |||||| ||||||| ||||| Sbjct 21782 GGCGTTCGCCTCGGTGGAGGGCATCTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCT 21841 Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACG 1456308 ||||||||||||||||||||| |||| || |||| ||||| | ||||| || || | Sbjct 21842 CAAGAAGCGCGGCCTCATGCCTGGTC-TCAGCTTCTCGAACGAGCTGATCAGCCGTGATG 21900 Query 1456309 A 1456309 | Sbjct 21901 A 21901 Score = 152 bits (168), Expect = 7e-31 Identities = 237/326 (73%), Gaps = 12/326 (4%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCG-ACCGAC 1456510 ||||| ||||| ||||| || | ||| | | ||| |||||||| | | || | | | Sbjct 21907 TGCACACGGACTTCGCCTGCCTCATGTACTCCAAGCTGGTCAACAAACTGCCGGAGAGCC 21966 Query 1456511 GTGCCCAAGCAGATCAT-CGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTC 1456569 ||| || | ||||| | ||| || || || | ||| ||| | |||||||| | || || Sbjct 21967 GTGTGCATG-AGATCGTGCGT-GACGCGGTGGTGATTGAGCACGAGTTTGTGTGTGACTC 22024 Query 1456570 GCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 ||| || |||| ||| |||||||||||| | | ||||||||||||||||| || || Sbjct 22025 GCTCCCTGTGGAGCTGATCGGCATGAACTCGGGC-CTCATGTGCCAGTACATCGAGTTC- 22082 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCA--AC 1456687 || || ||||| ||||| | || || || | ||| ||||| ||| | | || Sbjct 22083 GTGGCTGACCGTCTGCTGTACTCACTGGG-TGTGTCCAAGATCTACC--ACGTCAAGAAC 22139 Query 1456688 CCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGC 1456747 |||||| |||||||| ||||||| ||| ||||||||||||||||||||||| || Sbjct 22140 CCGTTCGACTGGATGGACATGATCTCTCTCCAGGGCAAGACCAACTTTTTCGAGAAGCGT 22199 Query 1456748 GT-GGCGAGTACGCCAAGGCCGGCGT 1456772 || ||||||||| | ||||| || || Sbjct 22200 GTGGGCGAGTACTCTAAGGCTGGTGT 22225 >seq173 Length=44675 Score = 208 bits (230), Expect = 1e-47 Identities = 335/476 (70%), Gaps = 4/476 (1%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAG 332932 |||||||| ||||| || || ||||| | | |||||||| | | | || |||||||| Sbjct 37396 AAGCGCAGAATGGCGCAGCGACTCTGGATCGGCTCGATGATCTTCGTGGAGTTGTTGCAG 37455 Query 332933 GCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGG 332992 ||||| ||||||||||| || | | ||||| || || || ||||| ||| Sbjct 37456 GCCAGCGCAAACCGCGTGGTGGCCGAGAAGATCTCCATCGTGCGTCGCAGCGCCTGCTGG 37515 Query 332993 GCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGC 333052 ||||| | ||| | | |||| |||||||| ||||| | |||||||||||| || | ||| Sbjct 37516 GCCGCGGACGTCATGGAGTCCGCCTCGTCCAGGATCACGATCTTGTGGCGACCCGGAGGC 37575 Query 333053 AGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCGC 333112 || ||| | | | ||| ||||| | |||||||| ||| | |||||| Sbjct 37576 AGCGTCACCTTCTGCTGCGCGAACATCTTGATCTTGCTGCGCACGGTGTCGATGCCGCGG 37635 Query 333113 TCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCGC 333172 ||||| ||||| ||||| || ||||| |||| | || || |||| || ||||| Sbjct 37636 TCGTCGGACGCATTGAGCTCCAGCACCGCCTGCTTCACGCTCGGGCCCAGCAGCTCGCGC 37695 Query 333173 GCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGAGGTTG 333232 ||||| | | ||||||||||||||| |||||||| ||||| |||| ||| | ||||| Sbjct 37696 GCCAGACTCAGGATGCTCGTGGTCTTACCCGTGCCCGGCGGCCCCGACAGGATCAGGTTC 37755 Query 333233 GGCATGTTG-CCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTGCTCGTTGCCGAC 333291 | ||||||| ||| | || |||| ||||| ||| || | | || |||||| || Sbjct 37756 GTCATGTTGCCCGCCTGC-GCCATCGCCTGTAGGCTCGCGATCGTGTCGCGGTTGCCCAC 37814 Query 333292 AATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCCATGGGAGGC-CAAAGTCG 333346 | ||| | ||||| || |||||||| || | ||| |||| | |||||||| Sbjct 37815 CACGTCCGCCAGCACGCGCGGACGGTACTTCTCCACCCA-CGGAGCCTCAAAGTCG 37869 >seq345 Length=31688 Score = 167 bits (184), Expect = 3e-35 Identities = 221/305 (72%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 || |||||| ||||||||| |||| ||||| || || ||||||||||| || || Sbjct 12385 ACGTACGAGTTGATGTCGCAGAAGTTCTTCACGCATGCCACTCCCACGCTCTTCAACGCT 12444 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 ||||| ||||| || ||| || |||||||| || ||| |||| ||| ||| || || Sbjct 12445 GGCACTCCGCGTCCTCAGCTGTCCTCGTGCTTCTTGCTGGCCATGCAGGACGACTCCATT 12504 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 ||||||||||| ||||| || |||||||| ||| ||||||||| ||| || || || Sbjct 12505 GAGGGCATCTACGACACTCTGAAGCAGTGTGCGTGCATCTCCAAATGGGCTGGGGGTATT 12564 Query 260063 GGTTTTGCCGCA--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCC 260120 || | | | | ||||| | || ||| | | ||| | ||||| |||||| Sbjct 12565 GGCAT--CAGTATGCACAACATCCGAGCCACTAACAGTTACATCCGAGGCACGAACGGCT 12622 Query 260121 AGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACC 260180 |||||| ||| | | || ||||| || || |||||||||||||| || ||||| |||| Sbjct 12623 CGTCCAATGGCATCATCCCAATGCTGCGGGTGTTTAACGACACGGCTCGGTACGTGGACC 12682 Query 260181 AGTGC 260185 || || Sbjct 12683 AGGGC 12687 Score = 123 bits (136), Expect = 4e-22 Identities = 325/490 (66%), Gaps = 16/490 (3%) Strand=Plus/Plus Query 262924 CGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAAC 262983 || |||||| | || ||||| | |||||| ||||| |||| ||||||||||||||||| Sbjct 13600 CGTAACTCGCTACTGGTGGCCCCCATGCCTACGGCTTCGACTGCGCAGATCCTGGGCAAC 13659 Query 262984 ACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGAC 263043 | ||| | ||||| | ||| ||||| |||| ||||| ||||| | || || Sbjct 13660 AATGAGTCCATCGAGCCCTACACATCGAACATGTACAACCGCCGTGTGCTTGCTGGTGAG 13719 Query 263044 TTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCC 263103 || || | || ||| |||| | ||| || | | || ||| | ||||||||| Sbjct 13720 TTCACGATCGTGAACAAGTACCTAATGAAGGAGCTGATCGAGCTGGGCATCTGGACGCCC 13779 Query 263104 GACTTTCGCGACCGGCTCATTGCGGCACAG-GGCTCGGTGCAGGGCTTTGACGACGAGGA 263162 || ||||| ||| | || | | || | || || |||||| | | | ||| Sbjct 13780 GAGGTTCGCAACCAGATCCTGAACG-ACGGTGGGTCTGTGCAGA------AGGTCAAGGT 13832 Query 263163 GGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGT---GCCCAACCGGGT 263219 | ||| | | | |||| | |||||| ||||||||| | || || ||| Sbjct 13833 CATCCCGGACAACGTAAAGGACAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGTCGGT 13892 Query 263220 GACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCT 263279 | | ||| || | |||||||| | | || || |||||| |||||||||||| | Sbjct 13893 GC---TGGATCTGTCAGCCGACCGTGGCGCTTACATCTGCCAGAGTCAGTCGCTCAACAT 13949 Query 263280 GTACCTCGCCGACCCGACG-GCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTC 263338 | | |||||||||||| | | ||| |||| || |||||| ||| || ||| Sbjct 13950 CCATATTGCCGACCCGACGATCAGCAAGC-TCACATCCATGCACTTCTACGCTTGGAAGA 14008 Query 263339 GCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAAT 263398 || |||||||| ||||||||||| ||||| || || ||| |||| || |||| Sbjct 14009 AGGGACTCAAGACGGGCATGTACTACATGCGCGGGCGCCCGAAAGCCGACGCTATCCAAT 14068 Query 263399 TCACCGTCGA 263408 ||||||| || Sbjct 14069 TCACCGTGGA 14078 >seq72 Length=67061 Score = 158 bits (174), Expect = 2e-32 Identities = 209/289 (72%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 724852 CGGTTGGCAAGCGCGGTCGCGGCCAGCGCAAGAAGAATTATGCCTCGTACTCGTCCTTTA 724911 |||||| |||| ||| |||| |||||||| || ||||||||| ||| | Sbjct 36942 CGGTTGCCAAGTCCGGCAAGGGCCGTGGCAAGAAGCGCGTTGAGTCGTACTCGACCTACA 36883 Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||||||| || || |||| | | | | | | Sbjct 36882 TCTACAAGGTGCTGCGTCAGGTGCACCCCGAGAC-----GGGCATCAGCAAGCGCGGC-A 36829 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 ||||||||||||||||||| |||||||||| |||| || || | | | |||||||| Sbjct 36828 TGTCGATCATGAACTCGTTCATCAACGACATCTTCGAGCGTATTGCCTCGGAGGCCGGCA 36769 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||| |||| | ||||||| ||| || || || ||||||||||||||||||| Sbjct 36768 AGCTGTCGCGATACAACAAGAAGTCGACGCTCTCCAGCCGTGAGATCCAGACCGCCGTGC 36709 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||| || | | ||| || ||||||| ||||||||| || |||||||| Sbjct 36708 GCCTCATGCTCCCCGGTGAGCTGGCCAAGCACGCCGTGTCGGAGGGCAC 36660 >seq304 Length=34321 Score = 150 bits (166), Expect = 3e-30 Identities = 181/245 (74%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| ||| |||||||||||||| ||||||||||| || || || Sbjct 26706 TCGTACTCGACCTACATCTACAAGGTGCTGCGTCAGGTGCACCCTGAGAC-----GGGCA 26652 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || | | | | | |||||||||||||||||||| |||||||||| |||| || || Sbjct 26651 TCAGCAAGCGCGGC-ATGTCGATCATGAACTCGTTCATCAACGACATCTTCGAGCGTATT 26593 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | | |||||||| ||| |||| | ||||||| ||| || || || ||| Sbjct 26592 GCCTCGGAGGCCGGCAAGCTGTCGCGATACAACAAGAAGTCGACGCTCTCCAGCCGTGAG 26533 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||||||||||||||| || | | ||| || ||||||| ||||||||| || ||| Sbjct 26532 ATCCAGACCGCCGTGCGCCTCATGCTCCCCGGTGAGCTGGCCAAGCACGCCGTGTCGGAG 26473 Query 725136 GGCAC 725140 ||||| Sbjct 26472 GGCAC 26468 >seq652 Length=20755 Score = 118 bits (130), Expect = 2e-20 Identities = 310/470 (66%), Gaps = 6/470 (1%) Strand=Plus/Plus Query 2133408 ACCATGCTGGTCTGCCTGGGCGAGGATGTGACGCGCGAGGGCCTCCTGGACACACCCATG 2133467 ||| |||||| ||| | || ||||| | ||||||||| ||| | | || || ||| Sbjct 12438 ACCTTGCTGGAATGCATCGGAGAGGACCCGCAGCGCGAGGGACTCGTCAAGACGCCAATG 12497 Query 2133468 CGCGTGGCCAAGGCCATGGTGGAGCGCACGCGCGGCCATCGCATGACCCTGGCCGACGCC 2133527 ||| ||||||| || || | | |||| || | || || ||||||||||| Sbjct 12498 CGCATGGCCAAAGCTTTGCTCTACAACACGAAAGGTTACGGCCAGAGCCTGGCCGACGTG 12557 Query 2133528 GTCGGCGGCGCCCTCTTTGACGAGGCGTCGGACGAGATGGTGACGGTGCGCGATATTGAC 2133587 | || ||| | || || |||| ||||||||||| | ||||| || || ||| Sbjct 12558 CTGAACGAGGCCGTGTTCGAGGAGGACCACGACGAGATGGTCATCGTGCGGGACATCGAC 12617 Query 2133588 TTTTTCTCCATGTGCGAGCACCACCTGCTGCCCTTTATCGGCAAGGCCCACGTGGGCTAC 2133647 | | ||||||||||||||||||| || |||| || | ||||| | ||| | ||||| Sbjct 12618 CTGTACTCCATGTGCGAGCACCACATGGTGCCGTTCACGGGCAAAGTGCACATCGGCTAT 12677 Query 2133648 CTGCCCGCGGGCAAGATCATCGGTCTGAGCAAGATCCCGCGCATCGTCGACATGTTTTCC 2133707 | ||| ||||| | | || || |||||| || | || | ||| |||| || Sbjct 12678 ATCCCCAACGGCAAAGTGCTGGGGCTCAGCAAGCTCGCTCGAGTGAGCGAGGTGTTCTCT 12737 Query 2133708 GACCGCTTCCAAGTACAGGAGGCACTCACGCGCCAGATCGC---CGAGAGCGTGAGCCAG 2133764 || | || || |||||| ||| || |||||||| || | | || || Sbjct 12738 AGACGTCTGCAGGTGCAGGAGAGACTGACCAAGCAGATCGCGAACGCTATCATGGGCGTC 12797 Query 2133765 GTTACGGGCGCGCGCGGCGTCGGCGTCGTCCTCGAGGGCCTGCACATGTGCGTGTGTATG 2133824 || | || | | ||||| | |||||| | |||| | |||||||||| || ||| Sbjct 12798 ATT--GAGCCCAAG-GGCGTGGCGGTCGTCATTGAGGCCACGCACATGTGCATGGTCATG 12854 Query 2133825 CGCGGCGTGCGCAAAACGGGCTCGAACACGGTCACGCGCGTCCTCCTGGG 2133874 ||||||||| || | || ||| |||||||||| || | | ||||| Sbjct 12855 CGCGGCGTGGAGAAGAGCGGGGCGAGCACGGTCACGAGCTCCGTGCTGGG 12904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177229981224212