Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq32 87.8 1e-12 >seq32 Length=91914 Score = 87.8 bits (96), Expect = 1e-12 Identities = 304/464 (66%), Gaps = 8/464 (2%) Strand=Plus/Plus Query 40858 GGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAAT 40917 |||| | ||| |||||||| || || ||||| || || | ||| |||||||| || |||| Sbjct 86765 GGGAGGTAGGAGATCTTGGACCGGTCTATGGTTTCCAATGGCGCCATTTTGGTGCCAAAT 86824 Query 40918 ATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTA-CAGTGCGTTATA 40976 | | ||| | | || ||||| |||| |||| || | ||| | || || Sbjct 86825 ACACGAACATGCATGCGGACTATACTGGCCAAGGCGTGGACCAGCTCGCAGAG-GTGATT 86883 Query 40977 GATACGATTAAATCCGATCCCGATAG-CCGACGTATAATATTGTGCGCGTGGAACCCAAC 41035 | | | | | ||| ||| | | ||| || || | ||| ||||||||||| | Sbjct 86884 CACAAGCTGCG-TACGAACCCCACTGACCGCCGGATTGTGCTGTCGGCGTGGAACCCCGC 86942 Query 41036 GGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA- 41094 || | || ||||| |||| || || || |||| || ||||| |||| | ||| Sbjct 86943 TGATCTCAATGAAATGGCGCTGCCGCCGTGCCACATGTTCTGCCAGTTCTACG-TGGCAG 87001 Query 41095 ATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGT 41154 | ||||| |||| || || |||| || | || | ||||||||||| || || || | Sbjct 87002 ACGGTGAGTTGTCGTGCCAGATGTACCAGCGCTCGGCCGACATGGGACTCGGCGTACCAT 87061 Query 41155 TTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAAC 41214 | ||||| || || || || ||||| ||| |||| || || || | | |||| Sbjct 87062 TCAACATCGCCAGCTACGCGCTGCTAACGCGATTGATAGCGCAGGTGGCAGGACTGAAAC 87121 Query 41215 CTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCC-G 41273 |||| || |||||||| | || || | |||| | || | || ||| | ||||| Sbjct 87122 CTGGCGAGTTTGTTCATGTCATCGGTGACGCACATGTGTATCTCAACCACGTGGAGCCAC 87181 Query 41274 TTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCT 41317 || | | |||| || || || ||| | |||||||| || || Sbjct 87182 TTCAGA-AACAGCTAACGCGCGCACCGCGCCCATTTCCGACACT 87224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397426810086130