Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq345 105 2e-17 >seq345 Length=31688 Score = 105 bits (116), Expect = 2e-17 Identities = 348/536 (65%), Gaps = 4/536 (1%) Strand=Plus/Plus Query 254972 GGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGC 255031 ||||| || |||||| | || ||||| ||| || |||||| ||||| || || || || Sbjct 12631 GGCATCATCCCAATGCTGCGGGTGTTTAACGACACGGCTCGGTACGTGGACCAGGGCGGA 12690 Query 255032 GGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGG 255091 |||||||| |||| ||||| | |||||| ||||||||||||| || ||| | | Sbjct 12691 GGCAAACGTAAAGGATCGTTCGCTATCTACTTGGAGCCGTGGCATGCTGACGTCTTCGAG 12750 Query 255092 TTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACC 255151 || || || | || ||||| |||| || || || ||| | | | | Sbjct 12751 TTCTTGGACCTACGTAAGAACCACGGCAACGAGTTGCACCGTGCTCGTGACTTGTTCTAC 12810 Query 255152 GCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTC 255211 ||| | ||| | |||||||| ||| |||||||||| | | | ||||| | Sbjct 12811 GCTCTGTGGGTCCCTGATCTGTTCATGAAACGCGTGGAAGCCAATGGCAAGTGGAGTTTG 12870 Query 255212 ATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTG 255271 | |||||||| | | || || || ||| | ||||| ||||||||||||| || Sbjct 12871 TTCTGTCCCAATGAAGCTCCTGGCCTCTACGAGTGCTGGGGAGACGAGTTTGAAACTCTC 12930 Query 255272 TATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACGCCAAGTGCCCGCGAAGAAGATCTG 255330 || | |||||||| | || || | || | | | | | || || || | || Sbjct 12931 TACGAGAAGTACGAGAAGGAGGGACGTGCGCGCAAGACGA-TCAATGCACAGCAGCTGTG 12989 Query 255331 GAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAGAC-C 255389 | | |||| || | |||| | || || || |||| ||| | || |||| ||| | Sbjct 12990 GTTCTCGATCTTGGACGCGCAGATTGAGACGGGTGTGCCCTTCATGCTGTACAAGGACGC 13049 Query 255390 ACATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGAACCTGTGCA 255449 || |||| ||| ||||| | | || ||||| ||| | ||| ||||| Sbjct 13050 GGCCAACCGCA-AGTCCAACCAGCAGAATTTGGGCACGATCCGCTCCAGTAACTTGTGCT 13108 Query 255450 CCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCGTCC 255505 |||| | | | | ||||||| || | |||||||| || ||||||||||||||| Sbjct 13109 GCGAGGTGATGGAGTACACGTCGCCGGATGAGGTGGCGGTGTGCAACTTGGCGTCC 13164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588213367555570