Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq345 203 4e-47 seq14 116 5e-21 seq97 87.8 2e-12 seq2982 86.0 8e-12 >seq345 Length=31688 Score = 203 bits (224), Expect = 4e-47 Identities = 683/1046 (65%), Gaps = 33/1046 (3%) Strand=Plus/Minus Query 111053 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 111112 || || ||||| |||||||| | ||| | ||| | ||| ||||| || ||||| || || Sbjct 13346 TCGGCCAGACCCTGAACACCAATACCCACAGGGCGGTGGCGCATGTTGGACTTGCGAGCC 13287 Query 111113 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 111172 | | || || ||| | || |||| || || ||| ||||| ||| || | ||| Sbjct 13286 TCCACGACTGGGTAATAGTTGATGTCGATCACCTTGTTGAGATTACGGGTCACCACCTTA 13227 Query 111173 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA 111232 || | || | || || | || | ||| | || | || | || | || || Sbjct 13226 GTCACGTCGTAGAGCTTCTGGTAGTTGAAA-----ACTC-CGTCCTCCACGAATTTAGGC 13173 Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292 || || | || ||||| ||||| || ||| ||||||| |||||||| | | Sbjct 13172 AGTGCTACGGACGCCAAGTTGCACACCGCCACCTCATCCGGCGACGTGTACTCCATCACC 13113 Query 111293 TCTGTACATAAGTT---GGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || ||||| ||| | ||||| |||||||||| ||||| ||| | Sbjct 13112 TCGCAGCACAAGTTACTGGAGCGG---ATCGTGCCCAAATTCTGCTGGTTGGACTTGCGG 13056 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||| ||| |||||||| |||||| ||||| |||||||| |||| | | | || Sbjct 13055 TTGGCCGCGTCCTTGTACAGCATGAAGGGCACACCCGTCTCAATCTGCGCGTCCAAGATC 12996 Query 111410 GCCTTCCAAACATCGGCGGCTGGTACAATGG-CGT--TG---GCCCGTCCCTCCGCCTCG 111463 | ||| | || |||| | || || ||| || || ||||||||| |||| Sbjct 12995 GAGAACCACA-----GCTGCTG-TGCATTGATCGTCTTGCGCGCACGTCCCTCCTTCTCG 12942 Query 111464 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTT 111522 ||||| |||||| | ||||||||| || ||| | || ||| |||| || || || | Sbjct 12941 TACTTCTCGTAGAGAGTTTCAAACTCGTCTCCC-CAGCACTCGTAGAGGCCAGGAGCTTC 12883 Query 111523 GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGG 111582 | |||||||| | | ||| | ||| | || || || |||||||| || || || Sbjct 12882 ATTGGGACAGAACAAACTCCACTTGCCATTGGCTTCCACGCGTTTCATGAACAGATCAGG 12823 Query 111583 AATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTC 111641 | |||||| | | || | || | | ||| | || || ||| || ||||| | Sbjct 12822 GACCCACAGAGCGTAGAACAAGTCACGAGCACGGTGCAACT-CGTTGCCGTGGTTCTTAC 12764 Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 111701 ||| || | |||||| | || || || ||||| ||||| | |||| |||| |||| Sbjct 12763 GTAGGTCCAAGAACTCGAAGACGTCAGCATGCCACGGCTCCAAGTAGATAGCGAACGATC 12704 Query 111702 CCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 | || || ||| | | || | || || || || ||| ||||||| || || |||| Sbjct 12703 CTTTACGTTTGCCTCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTAAACACCCGCAGCA 12644 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 111818 |||| || || |||| || || || || || || || | ||| |||||| | Sbjct 12643 TTGGGATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAACTGTTAGTGGCTCGGA 12584 Query 111819 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 111878 | || || || ||||||||||||||||| || ||||| |||||||| | | | Sbjct 12583 TGTTGTGCATACTGATGCCAATACCCCCAGCCCATTTGGAGATGCACGCACACTGCTTCA 12524 Query 111879 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 111938 |||| | ||||| || | || ||||| |||| |||| | | |||||| ||||| Sbjct 12523 GAGTGTCGTAGATGCCCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGAGGACA 12464 Query 111939 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT- 111997 ||| || | || || ||||| |||||||| || || || || || |||| | || | Sbjct 12463 GCTGAGGACGCGGAGTGCCAGCGTTGAAGAGCGTGGGAGTGGCATGCGTGAAGA-ACTTC 12405 Query 111998 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATT 112057 || |||||| ||||| ||||||| | | | |||| | ||||||||| | Sbjct 12404 TGCGACATCAACTCGTACGTCTCCAGAGCTGCCTGGATGTTGCTCTTGTGGATGCCCAGA 12345 Query 112058 GCGACCCGCATGAACATGTACTGTGG 112083 || || ||||| | ||| | ||| || Sbjct 12344 GCCACGCGCATAATCATTTGCTGCGG 12319 >seq14 Length=111874 Score = 116 bits (128), Expect = 5e-21 Identities = 332/501 (66%), Gaps = 12/501 (2%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| || ||||||||||| || | || || | ||||| Sbjct 22210 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATC 22151 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 |||| || || ||||| ||| | || | ||| || | | | || ||||| Sbjct 22150 CAGTCGAACGGGTTCTTGACGTGGTAGATCTTGGACACACCCAGTGAGTACAGCAGACGG 22091 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT-ACA 122549 || | ||| |||| ||||||| | |||| | |||||||| ||||| || | ||| Sbjct 22090 TCAGCCACGAACTCGATGTACTGGCACATGAGGCCCGAGTTCATGCCGATCAGCTCCACA 22031 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 ||||| | ||| | | ||| | | ||||||| | ||||| || |||||| | || Sbjct 22030 -GGGAGCGAGTCACACACAAACTCGTGCTCAATCACCACCGCGTCACGCACGATCTCATG 21972 Query 122610 GATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 122665 | | | ||| ||| || | | || | | | ||| || ||| || | Sbjct 21971 CACACGGCTCTCCGGCAGTTTGTTGACCA-GCTTGGAGTACATGAGG--CA-GGCGAAGT 21916 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 || ||| | |||||||| ||| || || || || ||||||| ||||| ||||||| Sbjct 21915 CCGTGTGCATGCCCTCATCACGGCTGATCAGCTCGTTCGAGAAGCTGAGACCAGGCATGA 21856 Query 122726 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 122785 | || |||||||| | ||| | || | |||||| || || ||||||||||| ||||||| Sbjct 21855 GGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCCTCCA 21796 Query 122786 CACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGAC-TTTGCATCAAACCATTTC 122844 | | || ||||| | || || || | | | || ||| || || || |||| || Sbjct 21795 CCGAGGCGAACGCCAGCAGACGCTCCGGGTATGA-CGACACACGTGGGTCGCACCACTTG 21737 Query 122845 ATTGCCCATTTCGCCTTCTTC 122865 | |||||| || || |||||| Sbjct 21736 AGTGCCCAGTTGGCTTTCTTC 21716 >seq97 Length=59640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 271/411 (66%), Gaps = 15/411 (4%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 || || ||||| || || || | ||| | ||||| ||||| | || || ||| | ||| Sbjct 41015 TCGAATCGACCAGGACGCAGAATGGCCTTGTCAAGAATATCAGCACGGTTCGTGCCTGCA 40956 Query 11513 ATAACCACAATGCCAGTCTCATT---GTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 | ||||| | || ||| | || || |||||||||||| || | ||| ||| Sbjct 40955 AGCACCACCACACCT---TCACTCGAGTTGAAACCATCCATCTCGACCAGCAGTTGGTTA 40899 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACT-GCGT--TGCTTGC-C 11625 | || | ||| | ||| || || || | | | | || || || | ||| || | Sbjct 40898 AGCGTGTTTTCACGCTCGTCGTT-GCCGCCCGAGAAGTTGCCCTTGCTTCGTGCACGCGC 40840 Query 11626 CACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 11685 ||| |||||||| ||||||||||| ||||| ||||| || | ||||| | || Sbjct 40839 CACAGCATCAATTTCATCAATGAACACAATGCATGGAGCGTTCGCACGGGCCTCCTTGAA 40780 Query 11686 GAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGA 11745 || || || || | | | ||||||||| || |||||||| | || | | |||| Sbjct 40779 CAGGTCACGCACACGTGACGGACCCACACCGACGAACATCTCGATGAAATCCGAACCAGA 40720 Query 11746 GCACTG--GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTT 11803 | || || ||| || || | | |||||| || |||| || || || ||||| Sbjct 40719 --AATGCTGAAGAACGGCACGCTAGCTTCACCAGCAGTGGCCTTCGCCAGCAGCGTCTTA 40662 Query 11804 CCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA 11854 |||||||| ||| || | || || || || |||||||||||||||| Sbjct 40661 CCCGTACCGGGCGGGCCAACAAGCAGCGCACCCTTGGGGATCTTGGCACCA 40611 >seq2982 Length=4261 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 2094 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 2153 Query 145342 CAGGTAGGAGCT 145353 | |||||||||| Sbjct 2154 CCGGTAGGAGCT 2165 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 2838 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 2897 Query 145342 CAGGTAGGAGCT 145353 | |||||||||| Sbjct 2898 CCGGTAGGAGCT 2909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627984693489600