Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq345 257 2e-63 seq14 140 4e-28 seq196 100 4e-16 >seq345 Length=31688 Score = 257 bits (284), Expect = 2e-63 Identities = 1089/1691 (64%), Gaps = 72/1691 (4%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| ||||||||||| |||| |||||| || || | ||||| || | | ||| Sbjct 14034 GTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAAGCGTAGAAGTGCATGGATGTGAGCTT 13975 Query 117902 GGAGA-----GGGTTGG-ACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATG-A 117954 | || |||| || | | | ||| ||| | ||| ||| | |||| | Sbjct 13974 GCTGATCGTCGGGTCGGCAATATGGATGTTGAGCGACTGACTCTGGCA------GATGTA 13921 Query 117955 AGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCC 118014 |||| || || || || | || ||| | ||| |||| |||||| |||||||| ||| Sbjct 13920 AGCG-CCACGGTCGGCTGACAGATCCAGCACCGACTTCTGCTTGATCTCCCACACCGTCT 13862 Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCT 118074 |||| || ||| | | || ||||| || || || || | || ||||| | | Sbjct 13861 TGTACTTGTCCTTTACGTTGTCCGGGATGACCTTGACCTTCTGCACAGACCCACCGTCGT 13802 Query 118075 TGACCATGAGATCCTTCATATCCTTTGAC---CAGAGACCAATCTTTTTGAGATCCTCCA 118131 | || || | || | ||| | | |||| || | || | || |||| || Sbjct 13801 T---CAGGATCTGGTTGCGAACCTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCA 13745 Query 118132 CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 118191 || | ||| || || | |||||||| || || || | || || || | Sbjct 13744 TTAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGGCGGTTGTACATGTTCG 13685 Query 118192 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 118251 ||||| ||||| | | |||||||||| |||| ||| || || || || || || |||| Sbjct 13684 ATGTGTAGGGCTCGATGGACTCATTGTTGCCCAGGATCTGCGCAGTCGAAGCCGTAGGCA 13625 Query 118252 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGT 118311 |||| |||| || || |||||||| ||| | || ||| | ||||| || || Sbjct 13624 TGGGGGCCACCAGTAGCGAGTTACGGATACCGTGTTTGATAACGTTCTCCTTCAGCGCAG 13565 Query 118312 CCCAGT--CGTAGTT--GA-GCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACC 118366 |||||| | || || | | | || |||||| || ||||||| |||||| Sbjct 13564 CCCAGTTCCACAGGCCGGACGACGGGGAGACGCC--CCACATGTCGAACTGGAAGATACC 13507 Query 118367 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC--GCCAAT-TC 118423 | || ||||| |||| || ||||| || |||||| | |||| | |||| || Sbjct 13506 CTTACTAGCAGGCGAGCCCTGGAACGTCTCGTAAGGGCCC---AGCTCCTTGGCAATCTC 13450 Query 118424 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTT 118483 | || ||| | | || | || || || || |||||| |||| | Sbjct 13449 CATGGACGTCTCCATTGACGCATAGTAGATGGTCTCGAAAATGTTCTTGTTCAGCTCGCG 13390 Query 118484 GGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGG 118541 |||| ||| || |||||| ||| || | || || | || || ||||| || Sbjct 13389 AGCCTGTTCGCTTTCGAACGCGTAGTT--CATGAGGATGAAAGCGTCGGCCAGACCCTGA 13332 Query 118542 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACG---GGA 118598 ||||| | || | ||||| || | ||| || ||||| ||||| ||||||| || Sbjct 13331 ACACCAATACCCACAGGGCGGTGGCGCATGTTGGACTTGCGAGC---CTCCACGACTGGG 13275 Query 118599 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 118658 ||| | || | ||||| ||| | || ||||| ||| || ||||| || | || | Sbjct 13274 TAATAGTTGATGTCGATCACCTTGTTGAGATTACGGGTCACCACCTTAGTCACGTCGTAG 13215 Query 118659 AGCTTTTCGTAATC-AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 118717 ||||| | ||| | |||||| || || | || | ||||| || || | || Sbjct 13214 AGCTTCTGGTAGTTGAAAACTCCG-------TCCTCCACGAATTTAGGCAGTGCTACGGA 13162 Query 118718 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAA 118777 ||||| || ||||| | ||||||| |||||||| || | || |||||| Sbjct 13161 CGCCAAGTTGCACACCGCCACCTCATCCGGCGACGTGTACTCCATCACCTCGCAGCACAA 13102 Query 118778 GTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 118835 ||| || | || |||||||| |||| || || ||||| ||| ||| ||| Sbjct 13101 GTTACTGGAGCGG--ATCGTGCCCAAATTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCC 13044 Query 118836 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACA 118895 ||||| |||||| | ||| |||||||| | || | | | || | ||| | Sbjct 13043 TTGTACAGCATGAAGGGCACACCCGTCTCAATCTGCGCGTCCAAGATCGAGAACCACA-- 12986 Query 118896 TCGGCAGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCTTCCTCGTACTTTGTGTAGA 118950 || |||| ||| | | | ||| || || ||||| | ||||||||| ||||| Sbjct 12985 ---GCTGCTGTGCATTGATCGTCTTGCGCGCACGTCCCTCCTTCTCGTACTTCTCGTAGA 12929 Query 118951 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 119010 | | ||||||||| || ||| | ||| |||| || || || | || || ||||| | Sbjct 12928 GAGTTTCAAACTCGTCTCCCCAGCACTCGTAGAGGCCAGGAGCTTCATTGGGACAGAACA 12869 Query 119011 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 119070 | ||| | ||| | || || || |||||||| || || |||| ||| || || Sbjct 12868 AACTCCACTTGCCATTGGCTTCCACGCGTTTCATGAACAGATCAGGGACCCACAGAGCGT 12809 Query 119071 AGAAGAGATCCCGA-CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 119129 |||| | || ||| || | || || | | || || || ||| | ||||| || Sbjct 12808 AGAACAAGTCACGAGCACGGTGCAACT-CGTTGCCGTGGTTCTTACGTAGGTCCAAGAAC 12750 Query 119130 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGA 119186 || | || || || |||||||| |||| ||| | |||| || || ||||| | Sbjct 12749 TCGAAGACGTCAGCATGCCACGGCTCCAAGTAGATAGCGAACGATCCTTTACGTTTGCCT 12690 Query 119187 CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCA 119246 || |||||| || |||| || ||| ||||||| || || |||||||| ||||| ||| Sbjct 12689 CCGCCCTGGTCCACGTACCGAGCCGTGTCGTTAAACACCCGCAGCATTGGGATGATGCCA 12630 Query 119247 TCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGC 119306 | ||| ||| || || || || || | ||| |||||| || | ||| || Sbjct 12629 TTGGACGAGCCGTTCGTGCCTCGGATGTAACTGTTAGTGGCTCGGATGTTGTGCATACTG 12570 Query 119307 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 119366 || ||||||||||| ||||| || ||||| ||| |||| | | ||| || ||||||| Sbjct 12569 ATGCCAATACCCCCAGCCCATTTGGAGATGCACGCACACTGCTTCAGAGTGTCGTAGATG 12510 Query 119367 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGT 119426 || || || ||||| ||| | || | | |||||| |||| ||||| | || Sbjct 12509 CCCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGAGGACAGCTGAGGACGCGGA 12450 Query 119427 GTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTC 119485 || |||||||||||||| || || || || || |||| | || | || |||||| || Sbjct 12449 GTGCCAGCGTTGAAGAGCGTGGGAGTGGCATGCGTGAAGA-ACTTCTGCGACATCAACTC 12391 Query 119486 GTAGGTCTCCA 119496 ||| ||||||| Sbjct 12390 GTACGTCTCCA 12380 >seq14 Length=111874 Score = 140 bits (154), Expect = 4e-28 Identities = 306/450 (68%), Gaps = 20/450 (4%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||| ||||| ||||| || | | ||| | ||||| Sbjct 22210 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATC 22151 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || || |||||||| || | || | ||| || | | || ||||| Sbjct 22150 CAGTCGAACGGGTTCTTGACGTGGTAGATCTTGGACACACCCAGTGAGTACAGCAGACGG 22091 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||| ||||||| |||| | |||||||| ||||| || | ||| Sbjct 22090 TCAGCCACGAACTCGATGTACTGGCACATGAGGCCCGAGTTCATGCCGATCAGCTCCACA 22031 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| ||| | | ||| | | |||||| |||| || || |||||||| | || Sbjct 22030 -GGGAGCGAGTCACACACAAACTCGTGCTCAATCACCACCGCGTCACGCACGATCTCATG 21972 Query 129967 AAT---GGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CACGGC 130017 | | |||||| ||| | | ||| || |||| |||| | || ||| Sbjct 21971 CACACGGCTCTCCGG--CAGTT-TGTTGACCAG---CTTG--GAGTACATGAGGCA-GGC 21921 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 || ||| ||| | ||||| |||||| ||| || || |||||||||| ||||| || Sbjct 21920 GAAGTCCGTGTGCATGCCCTCATCACGGCTGATCAGCTCGTTCGAGAAGCTGAGACCAGG 21861 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 |||||| || |||||||| | |||||| || | || || ||||| ||||||||||| || Sbjct 21860 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCC 21801 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTC 130167 |||||| | |||||||| | |||||||| Sbjct 21800 CTCCACCGAGGCGAACGCCAGCAGACGCTC 21771 >seq196 Length=72114 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 179920 AGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCG 179979 ||||||||||| || ||||| || ||||| || ||||||||||| || || ||| Sbjct 57864 AGTTGCGCCACAGATGCATCGCGCACATTGAGGAGTTTACCACGGAGAGGAAAAACGCCG 57805 Query 179980 TAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 180039 || || ||||| ||||| || | |||||||| || || || | ||| || |||||||| Sbjct 57804 TACTGGTCACGCCCAACAACTGCAAGACCAGCCACAGCCAGTGCCTTGGCTGAATCACCT 57745 Query 180040 TCCGTCACGATGAGCGTACA 180059 || |||| ||| |||| ||| Sbjct 57744 TCAGTCAAGATAAGCGAACA 57725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618388616368560