Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq345 192 7e-44 seq14 116 4e-21 seq212 96.9 4e-15 seq97 96.9 4e-15 seq1596 82.4 9e-11 >seq345 Length=31688 Score = 192 bits (212), Expect = 7e-44 Identities = 399/584 (68%), Gaps = 9/584 (2%) Strand=Plus/Plus Query 104283 TGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 ||||||| ||||| |||||| || | || | |||| || || || || || |||||| Sbjct 12380 TGGAGACGTACGAGTTGATGTCGCAGAAGT-TCTTCACGCATGCCACTCCCACGCTCTTC 12438 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || ||||| || || | || || ||||| |||||| | | |||| |||| ||| Sbjct 12439 AACGCTGGCACTCCGCGTCCTCAGCTGTCCTCGTGCTTCTTGCTGGCCATGCAGGACGAC 12498 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || || | || ||||| | ||||| | | |||||||| ||||| || ||||||||| Sbjct 12499 TCCATTGAGGGCATCTACGACACTCTGAAGCAGTGTGCGTGCATCTCCAAATGGGCTGGG 12558 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 104521 |||||||| || || || | | |||||| ||| | || || || || || Sbjct 12559 GGTATTGGCATCAGTATGCACAACATCCGAGCCACTAACAGTTACATCCGAGGCACGAAC 12618 Query 104522 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 104581 || || |||| || || |||||||| || || ||||||| ||| || || || || Sbjct 12619 GGCTCGTCCAATGGCATCATCCCAATGCTGCGGGTGTTTAACGACACGGCTCGGTACGTG 12678 Query 104582 AATCAAGCTG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 104638 | || | | ||| || || ||||| |||| |||| | ||||| ||||| || Sbjct 12679 GACCAGGGCGGAGGCAAACGTAAAGGATCGTTCGCTATCTACTTGGAGCCGTGGCATGCT 12738 Query 104639 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-CG 104697 || || | |||||| | || | ||| ||||| || |||| | || | |||| || Sbjct 12739 GACGTCTTCGAGTTCTTGGACCTACGTAAGAACCACGGCAACGA-GTTGCACCGTGCTCG 12797 Query 104698 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 104757 || | |||| |||||| ||| | || ||||| |||||||| | || || | | ||| Sbjct 12798 TGACTTGTTCTACGCTCTGTGGGTCCCTGATCTGTTCATGAAACGCGTGGAAGCCAATGG 12857 Query 104758 CAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGG 104816 ||| ||| | | || ||||| | | || ||||| |||| ||| ||| | ||| || | Sbjct 12858 CAAGTGGAGTTTGTTCTGTCCCAATGAAGCTCCTGGCCTCTACGAGTGCTG-GGGAGACG 12916 Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCG 104860 |||||||| | || ||| ||||||||| | || || || ||| Sbjct 12917 AGTTTGAAACTCTCTACGAGAAGTACGAGAAGGAGGGACGTGCG 12960 >seq14 Length=111874 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| || | || || || | || ||||| ||||||||||| || ||||||||| | Sbjct 21771 GAGCGTCTGCTGGCGTTCGCCTCGGTGGAGGGCATCTTCTTCTCGGGCTCCTTCTGCTCC 21830 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || | |||||||||||||| || |||||||| |||||| ||||||| |||||||| ||| Sbjct 21831 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTCAGCTTCTCGAACGAGCTGATC 21890 Query 94924 TCTCGTGACGAGGG 94937 ||||| ||||| Sbjct 21891 AGCCGTGATGAGGG 21904 >seq212 Length=40772 Score = 96.9 bits (106), Expect = 4e-15 Identities = 252/379 (66%), Gaps = 14/379 (4%) Strand=Plus/Plus Query 169138 TGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATC 169197 |||||| |||| ||| || | |||| | | |||||| |||||| || |||| ||| Sbjct 31051 TGGCCAAAAGTGGTGGATGAGGTTGATCACCAAACCCTTAATGTGGCTGCCATCGTGATC 31110 Query 169198 GGCATCCGTCATGATCATGAGACGACCATACCG-AAGC---TCGGAAACATCTTGATAGT 169253 ||| | ||||||||| | | |||||||| |||| ||| || | || | Sbjct 31111 CTGATCTGCCATGATCATCAAGTGGCCATACCGCAAGCCCTTCGTTGAC----TCGTACT 31166 Query 169254 CCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTT--GAA-CTCTTGGTTTGATG 169310 || || | | ||||| | |||||| || |||| ||| ||||| ||| Sbjct 31167 TCTGGCCGTACTTGAGACCGAGGATCTT---GACCACGTTTTGAATCTCTTCGTTCTTCA 31223 Query 169311 TGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACAC 169370 || |||||| | || |||||||| ||| ||| || || || |||||||||| Sbjct 31224 GGATTTGTGTGTGACTTGCTTCGCGAACGTTCAGCATCTTACCTCGCAGTGGGAAGACAC 31283 Query 169371 CGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCAC 169430 | |||| ||| | |||||||||| ||| || | || || | ||| || || || || | Sbjct 31284 CATAGTAATCTCTGCCAACGACGGCGAGGCCACCCACAGCAACAGTTTTGGCGGAATCTC 31343 Query 169431 CCTCGGTGACGATGAGCGTACATTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCAT 169490 | || || | ||| || || || | | || |||||||| || | ||| ||||| | Sbjct 31344 CTTCCGTTAGGATCAGAGTGCAATCCTTACTTTTCGCCGTACCAGCGTGGTTGGCATCGT 31403 Query 169491 CCAATTTGGGAATACCAGT 169509 ||| |||||| ||||| || Sbjct 31404 CCAGTTTGGGGATACCCGT 31422 >seq97 Length=59640 Score = 96.9 bits (106), Expect = 4e-15 Identities = 273/411 (66%), Gaps = 15/411 (4%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 || || ||||| ||||| || | || | ||||| |||||| | || ||||| | || Sbjct 41015 TCGAATCGACCAGGACGCAGAATGGCCTTGTCAAGAATATCAGCACGGTTCGTGCCTGCA 40956 Query 9587 ATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | || || | |||| ||| | | |||||||||||||| || ||||||||| Sbjct 40955 AGCACCACCACACCT---TCACTCGAGTTGAAACCATCCATCTCGACCAGCAGTTGGTTA 40899 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACT-GCGT--TGCTTTC-C 9699 | || | ||| || || || || || | | | | || || || | ||| | | Sbjct 40898 AGCGTGTTTTCACGCTCGTCGTT-GCCGCCCGAGAAGTTGCCCTTGCTTCGTGCACGCGC 40840 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAA 9759 ||| |||||||| ||||||||||| || |||||||| || | || || | | || Sbjct 40839 CACAGCATCAATTTCATCAATGAACACAATGCATGGAGCGTTCGCACGGGCCTCCTTGAA 40780 Query 9760 GAGATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 || || || ||||| || || |||||||| || |||||||| | || | | | Sbjct 40779 CAGGTCACGCACACG--TGACGGACCCACACCGACGAACATCTCGATGAAATCCGAACCA 40722 Query 9818 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 ||| || ||| || || ||| |||||| ||| |||| || || || |||||| Sbjct 40721 GAAATGCTGAAGAACGGCACGCTAGCTTCACCAGCAGTGGCCTTCGCCAGCAGCGTCTTA 40662 Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 |||||||| ||| || | || || ||||| || |||||||| ||| Sbjct 40661 CCCGTACCGGGCGGGCCAACAAGCAGCGCACCCTTGGGGATCTTGGCACCA 40611 >seq1596 Length=8541 Score = 82.4 bits (90), Expect = 9e-11 Identities = 174/256 (68%), Gaps = 13/256 (5%) Strand=Plus/Minus Query 9572 CGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCT 9628 |||||||| ||||| || || | || || | ||||| ||||| ||||||||||| Sbjct 1387 CGATTCGTAGCGGCAATCACGATAACTCCGTTGGCATTACCTTCAAACCCATCCATCTCC 1328 Query 9629 GTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTG 9688 |||| | ||||| | || ||||| |||||||| |||| | ||||||| Sbjct 1327 GTCAGCAACTGGTTCAGTGTCTGTTCACGTTCATCGTTCGAGTTGAAACCACCA------ 1274 Query 9689 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGA 9748 ||| ||| ||| ||||| ||||| ||||| || | |||||| || | | | |||| Sbjct 1273 CGTGCCTTAGCCAACGCATCGATCTCGTCAATAAAAATGATGCACTGTGGGTACT-GCGA 1215 Query 9749 GCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAA 9806 | | || | ||||| || || || || ||||| || || | ||||||||||| Sbjct 1214 G-GCCTGCGTGAAGAGGTCTCGCACTCGAGCAGCGCCTCTCCCCACCAGCATCTCCACAA 1156 Query 9807 AGTTTGCGGCGGAACA 9822 ||| | ||| || || Sbjct 1155 AGTCCGAGGCTGAGCA 1140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583216865880240