Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq932 185 3e-41 seq15 95.1 4e-14 seq5661 89.7 2e-12 >seq932 Length=15359 Score = 185 bits (204), Expect = 3e-41 Identities = 935/1475 (63%), Gaps = 24/1475 (2%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || ||||| | ||||| || || || || |||| ||| ||||| || || || || || Sbjct 6426 GGTATCGACCTGGGTACCACGTACTCGTGCGTTGGTGTCTGGCAGAACGACCGCGTGGAG 6367 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || |||||||| ||||| || || | || ||||| || ||||| || || || || || Sbjct 6366 ATCATTGCAAACGATCAGGGAAATCGTACGACGCCGTCGTACGTGGCGTTCACGGACACC 6307 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| ||||||||||| |||| || || |||| || || || | || ||||| Sbjct 6306 GAGCGTCTGATTGGTGATGCTGCCAAGAACCAAGTGGCCATGAACGCACACAACACGGTG 6247 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTGATC 349442 ||||||| ||||| | || || | | || |||| || | | || || || Sbjct 6246 TTTGATGTCAAGCGTTTGATCGGACGCAAGTTCACTGATCCAGAAGT--GCAGTCGGACA 6189 Query 349443 TAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTG-ATAAACCAATTATTGAGGTT 349501 | || || | ||||| | | || || ||| | ||||||| | | ||| Sbjct 6188 TCAAGCACTGGCCTTTCAAAG-TGGCCCGTGGTCCGGAGAATAAACCTCAAGTGGTGGTG 6130 Query 349502 GAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGT 349560 | || || || || | || || || ||||| || || || || ||||| | | Sbjct 6129 CAGTACAAGGGCGAGTCGAAGAC-GTTCCAGCCCGAGGAGATCTCGTCCATGGTGCTGAT 6071 Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620 || ||| || | || || || | | ||| | || | | || || || || Sbjct 6070 CAAGATGCGCGAGGTGGCCGAGGCCTTCATCGGTAAGGAGGTGAAGAACGCCGTGATCAC 6011 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || || ||||| || || || | |||||| || || || || ||||| |||||| Sbjct 6010 GGTGCCGGCCTACTTCAACGACTCGCAGCGTCAGGCCACCAAGGACGCTGGTGCCATTGC 5951 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | || || || | || || || || || |||||||| || || || || || || Sbjct 5950 TGGCCTGAACGTGCTGCGTATCATCAACGAGCCAACTGCTGCGGCTATCGCCTACGGTCT 5891 Query 349741 TGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800 || || | | | | | || || | |||||||| || | || || || ||||| Sbjct 5890 GGACAAGAAGGGCGGC---GAGCGCAACGTGCTTATTTTCGACCTGGGCGGCGGCACTTT 5834 Query 349801 TGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860 || || || || || | |||||||||| || || || || || || || || || || Sbjct 5833 CGACGTGTCGCTGCTGAGCATTGAAGAGGGCATCTTCGAGGTGAAGGCGACGGCGGGCGA 5774 Query 349861 TACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATT 349920 || || || ||||| ||||| || || || ||||| || | | ||||| || || Sbjct 5773 CACGCACCTGGGTGGTGAAGACTTCGACAACCGTCTTGTCGAGTACTTTGTGGCTGAGTT 5714 Query 349921 TAAGCGTCAAGC----TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAA 349976 ||||| ||||| ||| ||||| | | || | || | || || || Sbjct 5713 CAAGCG-CAAGCACCGTAA---GGATATGACGGCGAGTCAGCGTGCTCTACGACGTCTTC 5658 Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036 | || ||||| || || || ||||| | || || || | | || | | ||||| | Sbjct 5657 GTACGGCGTGCGAGCGCGCCAAGCGAACTTTGTCCACTTCAGCGCAGGCGTACATTGAGA 5598 Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 ||||| | || || ||| || ||| || ||||||| ||||| |||||||| | Sbjct 5597 TTGATACGCTGTACGACGGCGTGGACTTCAACTCGACTATTACCCGTGCGCGGTTTGAGG 5538 Query 350097 AATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATG 350156 | ||||| || | ||| | || ||||| ||||| |||| | || Sbjct 5537 ATCTATGTGGAGAGTTCTTTCGCAAGACGATGGAGCCTGTCTCGCAAGTCCTGCGTGACT 5478 Query 350157 CAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTC 350216 | ||| | || || || ||| | | || || || | || || || || || || || | Sbjct 5477 CCAAACTATCAAAGAACCAGGTGAACGAGGTTGTGCTGGTGGGCGGCTCGACTCGAATCC 5418 Query 350217 CAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATT 350275 | || || || ||||| | || || || || || || |||| ||| || || || Sbjct 5417 CGAAGGTGCAGCAGTTGTTGATAGACTTCTTCAACGGTAAGGAACTGTTCAAG-TCGATC 5359 Query 350276 AATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAAT 350335 || || || || ||||| || ||||| || | || || || | |||||| ||| || Sbjct 5358 AACCCGGACGAGGCTGTGGCGTATGGCGCCACCGTCCAAGCTGCGATTTTAGGTGGCAAC 5299 Query 350336 AAGAGTTCT--AAAATTG-ATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGA 350392 | ||| || ||| | ||| || | ||||| |||||| | || | ||||||||| Sbjct 5298 GGGTCATCTTCCAAGTTGCAGGATTTACTGCTACTGGATGTAGCCCCGTTGTCGCTTGGA 5239 Query 350393 TTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACA 350452 | || ||| | |||| ||| ||||| || ||||| | || | ||| || ||| | Sbjct 5238 CTGGAGACTGCCGGTGGAGTCATGACCAAGCTCATTCCACGCAACACTACGGTTCCTGCG 5179 Query 350453 AAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTA 350512 || ||| | || | || || || | || || || || | | || || || || Sbjct 5178 AAGAAGACACAGTCGTTCTCGACGTACGCCGACAACCAATCCGGAGTGTTGATCCAGGTG 5119 Query 350513 TTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGT 350572 ||||| || ||||| | || | ||||| || || || | |||| ||| Sbjct 5118 TTTGAGGGCGAACGCACGATGACGCACGATAACCATCTTCTGGGCAAGTTTAACCTGGAC 5059 Query 350573 GAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCA 350632 | || || || ||||| | || || ||||| ||||| || | || ||| | || Sbjct 5058 GGCATCCCGCCCATGCCGCGTGGTGTGCCTCAAATTGACGTGACGTTTGATGTCGACGTC 4999 Query 350633 AATGGTATTTTAAATGTTACCGCAGTTGAAAAATC 350667 ||||| ||||| || || | || || || || || Sbjct 4998 AATGGCATTTTGAACGTGTCGGCTGTAGAGAAGTC 4964 >seq15 Length=109488 Score = 95.1 bits (104), Expect = 4e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 235883 AATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGG 235942 ||||| |||||||||| |||| ||||||| ||||||||| ||||||||||||||| ||| Sbjct 109062 AATATCCGGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGG 109003 Query 235943 ATCAAAACCCAGCATCTCCA 235962 ||| | |||| || |||||| Sbjct 109002 ATCGATACCCTGCTTCTCCA 108983 >seq5661 Length=1107 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 380 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 321 Query 74548 TCGGGCA 74554 ||||||| Sbjct 320 TCGGGCA 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515137410048878