Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq345 237 2e-57 seq196 138 1e-27 seq212 114 1e-20 seq119 113 5e-20 >seq345 Length=31688 Score = 237 bits (262), Expect = 2e-57 Identities = 343/473 (73%), Gaps = 12/473 (3%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||||| || ||| || |||| ||| ||||| ||||| || || || |||||| Sbjct 12382 GAGACGTACGAGTTGATGTCGCAGAAGTTCTTCACGCATGCCACTCCCACGCTCTTCAAC 12441 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 ||||| || | |||||| |||| |||||| || |||| ||| |||| ||||| Sbjct 12442 GCTGGCACTCCGCGTCCTCAGCTGTCCTCGTGCTTCTTGCTGGCCATGCAGGACGACTCC 12501 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || ||||||||||| || || ||| ||||||| ||||||||| ||| | || ||| Sbjct 12502 ATTGAGGGCATCTACGACACTCTGAAGCAGTGTGCGTGCATCTCCAAATGGGCTGGGGGT 12561 Query 53423 ATCGGTATC-CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 || || ||| ||| | ||| |||| || | || ||| || |||||||| Sbjct 12562 ATTGGCATCAGTATGCAC-AACATCCGAGCCACTAACAGTTACATCCGAGGCACGAACGG 12620 Query 53482 CGTCG-CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | ||| || |||| ||| | || ||||| || || || ||| ||||||| |||||||| Sbjct 12621 C-TCGTCCAATGGCATCATCCCAATGCTGCGGGTGTTTAACGACACGGCTCGGTACGTGG 12679 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 ||||||| || || || || || || |||||||| |||||| | ||||||||||| || | Sbjct 12680 ACCAGGGCGGAGGCAAACGTAAAGGATCGTTCGCTATCTACTTGGAGCCGTGGCATGCTG 12739 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC--TGC-C 53657 || | | ||||| | || || ||| ||| || || | | ||| ||| | ||| | Sbjct 12740 ACGTCTTCGAGTTCTTGGACCTACGTAAGAACCACGG---CAACGAGTTGCACCGTGCTC 12796 Query 53658 GTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGA 53709 ||||| |||| ||| ||||||||| | || || || |||||| || ||||| Sbjct 12797 GTGACTTGTTCTAC-GCTCTGTGGGTCCCTGATCTGTTCATGAAACGCGTGGA 12848 Score = 165 bits (182), Expect = 9e-36 Identities = 551/842 (65%), Gaps = 39/842 (5%) Strand=Plus/Plus Query 55106 AAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAAT 55165 ||||| |||| ||||| || ||||| || || || ||| ||| ||||||| || Sbjct 13210 AAGCTCTACGACGTGACTAAGGTGGTGACCCGTAATCTCAACAAGGTGATCGACATCAAC 13269 Query 55166 TACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGT 55225 || ||||| | | ||| |||||||||||| | || ||||| || | | || ||| Sbjct 13270 TATTACCCAGTCGTGGAGGCTCGCAAGTCCAACATGCGCCACCGCCCTGTGGGTATTGGT 13329 Query 55226 GTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCC-TTCGACTCGGAACCTGC 55284 || ||||| |||||||| ||||| | | | | | | | ||||| |||| || Sbjct 13330 GTTCAGGGTCTGGCCGACGCTTTCATCCTCAT-GAACTACGCGTTCGAAAGCGAACAGGC 13388 Query 55285 TCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCG- 55342 ||| || | ||| || |||| ||| || | |||||||| ||| | | ||| ||| Sbjct 13389 TCGCGAGCTGAACAAGAACATTTTCGAGAC-CATCTACTATGCGTCAATGGAGACGTCCA 13447 Query 55343 TGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGCTGACAAG 55402 || || | | |||| ||| | ||||||||||||| | ||||| ||| ||| Sbjct 13448 TGGAGATTGCCAAGGAGCT-GGGCCCTTACGAGACGTTCCAGGGCTCGCCTGCTAGTAAG 13506 Query 55403 GGACTTCTCCAGTTCGATCTATGGGGCAAGTCTGACCCCAT-GTTTGACAAGT------- 55454 || | |||||||||| | |||||| |||| |||| | || | | || Sbjct 13507 GGTATCTTCCAGTTCGACATGTGGGGC--GTCT--CCCCGTCGTCCGGCCTGTGGAACTG 13562 Query 55455 --------TGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCC 55506 ||||| | || || | || | || ||||| || || ||||| || Sbjct 13563 GGCTGCGCTGAAGGAGAACGTTATCAAACACGGTATCCGTAACTCGCTACTGGTGGCCCC 13622 Query 55507 AATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACAC 55566 ||||| || || ||||| || |||||| |||||||||| ||| | ||||||| ||||| Sbjct 13623 CATGCCTACGGCTTCGACTGCGCAGATCCTGGGCAACAATGAGTCCATCGAGCCCTACAC 13682 Query 55567 GACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATC---AACAAGCA 55623 | ||||| ||| ||||| || || |||||||| || |||| |||||| | Sbjct 13683 ATCGAACATGTACAACCGCCGTGTGCTTGCTGGTGAGTT---CACGATCGTGAACAAGTA 13739 Query 55624 CCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAA-CCCGCAGATCAAGACG-GATATT 55681 ||| | ||||| ||| || | || |||| |||| | || || ||| | Sbjct 13740 CCTAATGAAGGAGCTGATCGAGCTGGGCATCTGGACGCCCGAGGTTCGCAACCAGATCCT 13799 Query 55682 GTGCGGAACGGGGGGTCCGTCCAGAATCTGGAGAT--TCCTCTGCGTC-TCAAGGAGATT 55738 | || |||| ||||| || ||||| | || | ||| | | | ||||| | Sbjct 13800 GAACG--ACGGTGGGTCTGTGCAGAAGGTCAAGGTCATCCCGGACAACGTAAAGGACAAG 13857 Query 55739 TACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGT 55798 ||| ||||||||||||||| |||||| || | || || || || ||||| Sbjct 13858 TACAAGACGGTGTGGGAGATCAAGCAGAAGTCGGTGCTGGATCTGTCAGCCGACCGTGGC 13917 Query 55799 GCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAG 55858 || |||||| |||| ||||| || |||||| || | | || | | |||| Sbjct 13918 GCTTACATCTGCCAGAGTCAGTCGCTCAACATCCATATTGCCGACCCGACGATCAGCAAG 13977 Query 55859 TTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTG 55918 | | || |||||||| |||| ||||||||||||||||||||||| |||||||| || Sbjct 13978 CTCACATCCATGCACTTCTACGCTTGGAAGAAGGGACTCAAGACGGGCATGTACTACATG 14037 Query 55919 CG 55920 || Sbjct 14038 CG 14039 >seq196 Length=72114 Score = 138 bits (152), Expect = 1e-27 Identities = 195/274 (71%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 152027 GCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 |||| ||||| || || | || || ||||||||||| ||| ||||| || || |||| Sbjct 58790 GCGTAAAGATATACCGAGGACTAGCAGCATCCTTGCCTCCTTGCAGCCTGGTACCGAACT 58731 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | || || || | | || |||||||||| || ||||| | ||| |||| || | Sbjct 58730 GGCCTGATGGATACAACAGCGGAAGGTTGTTGGAACCAACGAAGTCCTGCGCCATGTTAA 58671 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 ||||||| |||| ||||||||||||||||| || || ||||| | ||| | Sbjct 58670 CAATCGTCGAATGCAACGAAGCTTCACCGTGGTGATAAGCTGTGTGCTCACTGCAGTAAC 58611 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266 |||| | |||||||||||||| || | ||||| | ||| ||||||||| ||| || Sbjct 58610 CCGCGAGCTGCGCCACCTTCACCTCGCTAGTCAGCCTGCGCTTCAGACAGGCGAAAAGCA 58551 Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 |||| ||||| || || | ||| || ||||| Sbjct 58550 CCTTCCGCTGCGAAATCTTAAGACCATCGACCAC 58517 Score = 116 bits (128), Expect = 4e-21 Identities = 292/437 (67%), Gaps = 19/437 (4%) Strand=Plus/Minus Query 117149 AACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAG 117208 ||||| || |||||||| || |||||||||| || | |||||| | || ||||||||| Sbjct 58943 AACCC-GTACCGATACCTTCCGCACCATTCACGAGCAGCATCGGGATGATAGGAACGTAA 58885 Query 117209 AACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCA--C 117266 || | ||||| || | | || ||||| | |||| ||||| |||| || | Sbjct 58884 TACACGGGCTCAACTGGGAATCCATCGTCGTCGGCGTAGCGGAGCAAAGCATCATCTTCC 58825 Query 117267 TC-GGATCGAATATGTTCTTGGTCCACGGTGCT-----AGGCGAGTGAAAATGTAACGAG 117320 || ||| |||| ||| ||||| || | || || || || |||| Sbjct 58824 TCAGGA---AATACCAAGCGGGT-----GTGCTTCTGAAGCAGCGTAAAGATATACCGAG 58773 Query 117321 AGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGA 117380 || |||||||||||||| || || | |||||||| || || || | ||| | Sbjct 58772 GACTAGCAGCATCCTTGCCTCCTTGCAGCCTGGTACCGAACTGGCCTGATGGATACAACA 58713 Query 117381 GGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGC 117440 | |||||||||| || || |||| || |||| ||| |||||||| || | Sbjct 58712 GCGGAAGGTTGTTGGAACCAACGAAGTCCTGCGCCATGTTAACAATCGTCGAATGCAACG 58653 Query 117441 TCGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCCCGCCAGCTGAGCCACC 117499 || ||||| |||||||| || || ||||| | || ||| ||||| ||||| |||||| Sbjct 58652 AAGCTTCACCGTGGTGATAAGCTGTGTGCTCACTGCA-GTAACCCGCGAGCTGCGCCACC 58594 Query 117500 TTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGC 117559 |||| || ||||| | ||| || ||||| ||| |||||| ||||| | Sbjct 58593 TTCACCTCGCTAGTCAGCCTGCGCTTCAGACAGGCGAAAAGCACCTTCCGCTGCGAAATC 58534 Query 117560 TTCAGACCATCCGCCAC 117576 || |||||||| |||| Sbjct 58533 TTAAGACCATCGACCAC 58517 >seq212 Length=40772 Score = 114 bits (126), Expect = 1e-20 Identities = 240/358 (67%), Gaps = 0/358 (0%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||| || || |||||||| || | ||| || | ||| || ||| || Sbjct 30042 CCCGTTCCGATACCGTCACTGCCGTTGACGAGCACCATGGGGAAAATCGGAATGTACCAC 30101 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || ||||| | | || ||||| || || || || | || |||||| ||| Sbjct 30102 TCTGGCTCGATCGACTGGCCGTCTTCATCCAAATACTTGAGCACATCATTGTCCAGAGGA 30161 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 ||| | || || || || | | ||| ||||| ||||| || | ||||||||| Sbjct 30162 TCGTAGATTCGACGCGTGAGTTGCTCCAAGTTGGTGAAAATGTAACGAGCACTGGCCGCA 30221 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 |||||||| || || ||||| || ||||| || ||| || |||| || |||| Sbjct 30222 TCCTTGCCGCCCATCAAACGCGTACCGAACTGACCGATAGGCGATAGAAGGTGGATGTTG 30281 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 ||| || || |||| ||| |||| |||||| || |||||||| || ||| ||| Sbjct 30282 TTGCTTCCGACAAAATCCTGTGCCATATTCACGATACAGCCCTGCAAGCTTTGTTCGCCG 30341 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCG 152233 ||||| || || | ||||| | | ||| || |||| ||| |||||||| | |||| Sbjct 30342 TGGTGGTATGCAGAATGCTCGGACACGTAACCAGCCAGCTGTGCCACCTTGAGCTCCG 30399 Score = 104 bits (114), Expect = 3e-17 Identities = 240/356 (67%), Gaps = 7/356 (2%) Strand=Plus/Plus Query 117149 AACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAG 117208 ||||| ||||||||||| || || || | || | ||| || | | |||| ||| Sbjct 30040 AACCC-GTTCCGATACCGTCACTGCCGTTGACGAGCACCATGGGGAAAATCGGAATGTAC 30098 Query 117209 AACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTC 117268 |||| ||||| | | | | ||||| || | ||||||||||| ||||||| Sbjct 30099 CACTCTGGCTCGATCGACTGGCCGTCTTCATCCAAATACTTGAGCACATCATTGTCCAGA 30158 Query 117269 GGATCGAATATGTTCTTGGTCCACGGTGCT--AGGCGAGTGAAAATGTAACGAGAGCTTG 117326 |||||| | || || | | |||| | | |||||||||||||||| || | Sbjct 30159 GGATCGTAGAT--TCGACGCGTGAGTTGCTCCAAGTTGGTGAAAATGTAACGAGCACTGG 30216 Query 117327 CAGCATCCTTGCC-ACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385 | ||||||||||| ||| ||| |||||||||||| || || | ||| | |||| Sbjct 30217 CCGCATCCTTGCCGCCCATCAA-ACGCGTACCGAACTGACCGATAGGCGATAGAAGGTGG 30275 Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445 | ||||||| || ||||| | || |||| || || || || || | ||| Sbjct 30276 ATGTTGTTGCTTCCGACAAAATCCTGTGCCATATTCACGATACAGCCCTGCAAGCTTTGT 30335 Query 117446 TCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTT 117501 || || ||||| || || | ||||| | |||||| || |||||||| |||||||| Sbjct 30336 TCGCCGTGGTGGTATGCAGAATGCTCGGACACGTAACCAGCCAGCTGTGCCACCTT 30391 >seq119 Length=54534 Score = 113 bits (124), Expect = 5e-20 Identities = 249/363 (69%), Gaps = 9/363 (2%) Strand=Plus/Plus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 ||| | ||| | ||||||||| | ||||| ||| || || ||| ||| |||||||| Sbjct 38100 CGCGAGCTCTACAAACTCACGCACACTGTGGCACTCTCCAGTCGCAACCACAAAATCTTC 38159 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 ||| | ||||| | ||| |||||||| || |||||||| |||||| ||||| Sbjct 38160 CGGAGTGTCGTGCTGTAGCATCCGCCACATGCATTCCACGTAGTCGCGTGCGTGGCCCCA 38219 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCTTGGC-CGTCTTGTTCCACTCCG 124659 ||||||||||||||||| ||| || | || ||| | || | | | | || Sbjct 38220 GTCGCGCTTGGCATCCAAGTTGCCCACGAAGAGGCACTTCTCGATTCCAGCACGAATGCG 38279 Query 124660 --CCAAACCCAGTGTAATCTTGCGCGTCAC-AAACTCGGAACCGCGTCGCTCAGACTCGT 124716 ||| | | | || ||||| || || || ||| | || ||||| ||| | ||||| Sbjct 38280 CACCACAGCGCGCGTGATCTTTCGAGTGACGAAAGTTGG-TCCGCGCCGCGGACTCTCGT 38338 Query 124717 GGTTGAACAGAATGCCAGTACA-CGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTC 124775 ||||||||| ||| || || || ||| ||||||||||| | ||||| | | || || | Sbjct 38339 GGTTGAACAAAAT-CCCGTTCACCGCGAACATCCCGTAGGCTTCGCGAT-GGTTCACGAC 38396 Query 124776 -ATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTT 124834 ||||| | | || |||| | | |||||||| || |||| ||| |||||||| Sbjct 38397 GCTCCAAAAGGCGAACTGCTTTGCTATCCCATAGGGTGAACGAGGGTGGAACGGGGTGTT 38456 Query 124835 TTC 124837 || Sbjct 38457 CTC 38459 Score = 105 bits (116), Expect = 7e-18 Identities = 185/263 (70%), Gaps = 15/263 (6%) Strand=Plus/Plus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTG 159002 |||||| || | ||||| |||||||||||||| |||||| || || ||| | || Sbjct 38112 AAACTCACGCACACTGTGGCACTCTCCAGTCGCAACCACAAAATCTTCCGGAGTGTCGTG 38171 Query 159003 TTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGC 159062 || ||||| |||||||| || ||||| || | ||||| ||||||||||||||||| Sbjct 38172 CTGTAGCATCCGCCACATGCATTCCACGTAGTCGCGTGCGTGGCCCCAGTCGCGCTTGGC 38231 Query 159063 ATCCATGTTCCCGAGCTCGATG-ACTT-----TTCCAG-ACTTTTTCCACTCAGCCAGAC 159115 ||||| ||| || | || | |||| |||||| || | | || ||| | Sbjct 38232 ATCCAAGTTGCCCACGAAGAGGCACTTCTCGATTCCAGCACGAAT---GCGCA-CCACAG 38287 Query 159116 CGAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGA--CTCATGGTTAAA 159173 || |||||||||| || || || || || ||||||||| | || ||| ||||| || Sbjct 38288 CGCGCGTGATCTTTCGAGTGACGAAAGTTGGTCCGCGCCG--CGGACTCTCGTGGTTGAA 38345 Query 159174 CAGAATGCCGGTACAAGCGAACA 159196 || ||| ||| | ||||||| Sbjct 38346 CAAAATCCCGTTCACCGCGAACA 38368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547174780954800