Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq32 178 1e-39 seq60 84.2 2e-11 >seq32 Length=91914 Score = 178 bits (196), Expect = 1e-39 Identities = 455/676 (67%), Gaps = 19/676 (3%) Strand=Plus/Minus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| || || ||||||| | || || || || ||||| || | | || Sbjct 87194 AGCTGTTTCTGAAGTGGCTCCACGTGGTTGAGATACACATGTGCGTCACCGATGACATGA 87135 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 |||||||| || |||| || || | || || || |||| ||| || || | |||| Sbjct 87134 ACAAACTCGCCAGGTTTCAGTCCTGCCACCTGCGCTATCAATCGCGTTAGCAGCGCGTAG 87075 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 ||||||||||| || ||||| ||||| |||||||| |||| | |||||| | ||| ||| Sbjct 87074 CTGGCGATGTTGAATGGTACGCCGAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAC 87015 Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATG 30103 || | ||| ||||| |||||| ||||| || | ||||||||| || || ||||| Sbjct 87014 GACAACTCACCGTCTGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGCAGCGCCATT 86955 Query 30104 AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT-GTT 30162 | || ||||||||| || ||| | || || | ||| ||||| || Sbjct 86954 TCATTGAGATCAGCGGGGTTCCACGCCGACAGCACAATCCGGCGGTCAGTGGGGTTCGTA 86895 Query 30163 C-CTG-ATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGC 30219 | | | || | ||| | ||| ||||| ||||| || || | ||||| || Sbjct 86894 CGCAGCTTGTGAATCAC----CTCTGCGAGCTGGTCCACGCCTTGGCCAGTATAGTCCGC 86839 Query 30220 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAG 30279 ||||| |||||| | || || ||||| | ||| ||||| || || |||||||| || Sbjct 86838 ATGCATGTTCGTGTATTTGGCACCAAAATGGCGCCATTGGAAACCATAGACCGGTCCAAG 86779 Query 30280 GTCTCCCTCTTCCCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30338 ||||| | |||| ||| || || || || |||||| | || | || || ||| Sbjct 86778 ATCTCCTACCTCCC-GTGACTGCAATCCTCTACTGTCCAGGTACTCACGCGATCCATTGC 86720 Query 30339 CGTCCCAGATCTTTACCCCCTTCT-CAGAGAGC-TCTTTGGAGTTTGTGGACCCTCTGAC 30396 |||||||||| | | |||||| | || ||| | | || | | ||| || || | Sbjct 86719 CGTCCCAGATATGAATATCCTTCTGCTGA-AGCGTGTGTGCA-CTCGTGTCGCCACTAAT 86662 Query 30397 GAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAGGG 30455 ||||||||||||||||||| | || | ||| || |||||||| ||||| || | || Sbjct 86661 GAACCACAGCAGCTCCTCCGCCACACCTCGCCAGAATACCCTCTTAGTCGTCAGCAACGG 86602 Query 30456 GAA---ACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCG 30512 ||| | ||| || | || | | || ||||| ||||| || |||| |||| Sbjct 86601 GAATACATTGTTCC-TCAGACTAAATCTCATCTGAGCCCCAAAAACCGACAGCGTCCCCG 86543 Query 30513 TGCCCGTCCTGTCTCC 30528 | ||||| | |||||| Sbjct 86542 TTCCCGTTCGGTCTCC 86527 >seq60 Length=68751 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/246 (67%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 49034 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 49093 |||||||||| | | || ||||| | |||| || | |||||| || | | ||| Sbjct 19090 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCCAGGATGAGCTGTGCCACTCGGTC 19149 Query 49094 GCCCCTCTCGACCCGAAAGGGGTCGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 49153 || | || ||| | ||| ||| | ||| ||||| || ||||| | |||||| Sbjct 19150 CCCACGCTTGACGGGGAAGTCTTCGGGCGAGTGGTTGAACAGGATCACGCCAACGTTGCC 19209 Query 49154 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 49213 | |||||||| ||| | || ||||| || ||| || || || ||||| |||||||| Sbjct 19210 GCGGTAGTCGGCGTCGATGACACCGGCGCCAGTGTCGATGAACTTCTTCAGTGCCAGGCC 19269 Query 49214 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGGCCAGGTCCGTCTT 49273 || | || ||||| | | ||||| ||| ||||| | | ||||||||||||| Sbjct 19270 AGAGCGAGGCGCCACGCGGGCGTAGCAGCCGTCGGGCACAGCGATGACCAGGTCCGTCTT 19329 Query 49274 TACCAG 49279 || || Sbjct 19330 GACGAG 19335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406280559802392