Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq911 172 5e-38 seq290 129 5e-25 >seq911 Length=16908 Score = 172 bits (190), Expect = 5e-38 Identities = 179/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||||||||||||| | || || || || ||||| ||||| Sbjct 6212 CATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTC 6271 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | || || || ||||| || ||||| |||||||| || ||||| || Sbjct 6272 GGACTCGATCGACAACGTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCA 6331 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACA 27165 ||||| ||||| | ||||||||| || |||| ||| | ||| |||| || |||| Sbjct 6332 GCAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGAC-GGTCGTACGTTGAGTGACTACA 6390 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || ||||||||||| | || |||| ||||| |||| |||||||| Sbjct 6391 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGCAT 6442 Score = 170 bits (188), Expect = 2e-37 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||||||||||||| | || || || || ||||| ||||| Sbjct 5985 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 6044 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || ||||| || ||||| |||||||| || ||||| || Sbjct 6045 GACTCGATCGACAACGTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCAG 6104 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 ||||| ||||| | ||||||||| || |||| ||| | ||| |||| || ||||| Sbjct 6105 CAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGAC-GGTCGTACGTTGAGTGACTACAA 6163 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||||||||| | || |||| ||||| |||| |||||||| Sbjct 6164 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGCAT 6214 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||||||||||||| | || || || || ||||| ||||| Sbjct 6440 CATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTC 6499 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | || || || ||||| || ||||| |||||||| || ||||| || Sbjct 6500 GGACTCGATCGACAACGTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCA 6559 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACA 27165 ||||| ||||| | ||||||||| || |||| ||| | ||| |||| || |||| Sbjct 6560 GCAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGAC-GGTCGTACGTTGAGTGACTACA 6618 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||| || ||||||||||| | || |||| ||||| |||| ||||| Sbjct 6619 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGG 6667 >seq290 Length=35206 Score = 129 bits (142), Expect = 5e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || |||| |||||| | || || ||||| ||||| || Sbjct 14893 CGGCATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCC 14952 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||| |||||||| || | || || || || |||||||| || |||||||| || || || Sbjct 14953 GTCGGACTCGATCGACAACGTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGA 15012 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || || || | || | ||| ||||| || |||| ||| | || | ||| || Sbjct 15013 CCAGCAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTA 15072 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || ||||||||||| | || |||| |||| |||| || ||||| Sbjct 15073 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGCAT 15126 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || |||| |||||| | || || ||||| ||||| || Sbjct 15121 CGGCATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCC 15180 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||| |||||||| || | || || || || |||||||| || |||||||| || || || Sbjct 15181 GTCGGACTCGATCGACAACGTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGA 15240 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || || || | || | ||| ||||| || |||| ||| | || | ||| || Sbjct 15241 CCAGCAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTA 15300 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| || ||||||||||| | ||| |||| ||||| | || || || Sbjct 15301 CAACATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGCGTCTTCGCGGCGG 15351 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || ||||| ||||| ||||| Sbjct 14669 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCG 14728 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || || |||||||| || |||||||| || || || || Sbjct 14729 GACTCGATCGACAACGTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCAG 14788 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | ||| ||||| || |||| ||| | || | ||| |||||| Sbjct 14789 CAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAAC 14848 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || |||| |||| |||| || ||||| Sbjct 14849 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGCAT 14898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434885639771520