Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq32 172 4e-38 seq60 93.3 3e-14 >seq32 Length=91914 Score = 172 bits (190), Expect = 4e-38 Identities = 454/676 (67%), Gaps = 19/676 (3%) Strand=Plus/Minus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| ||| || || |||||||| | || || || || ||||| || | | || Sbjct 87194 AGCTGTTTCTGAAGTGGCTCCACGTGGTTGAGATACACATGTGCGTCACCGATGACATGA 87135 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 |||||||| || |||| || || | || || || |||| ||| || || | |||| Sbjct 87134 ACAAACTCGCCAGGTTTCAGTCCTGCCACCTGCGCTATCAATCGCGTTAGCAGCGCGTAG 87075 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309 ||||||||||| || ||||| ||||| |||||||| |||| | |||||| | ||| ||| Sbjct 87074 CTGGCGATGTTGAATGGTACGCCGAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAC 87015 Query 27310 GAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATG 27369 || | ||| || || ||||| ||||| || | ||||||||| || || ||||| Sbjct 87014 GACAACTCACCGTCTGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGCAGCGCCATT 86955 Query 27370 AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT-GTT 27428 | || ||||||||| || ||| | || || | ||| ||||| || Sbjct 86954 TCATTGAGATCAGCGGGGTTCCACGCCGACAGCACAATCCGGCGGTCAGTGGGGTTCGTA 86895 Query 27429 C-CTG-ATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTAC 27485 | | | || | ||| | ||| ||||| ||||| || || | ||||| | Sbjct 86894 CGCAGCTTGTGAATCAC----CTCTGCGAGCTGGTCCACGCCTTGGCCAGTATAGTCCGC 86839 Query 27486 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAG 27545 ||||| |||||| | || || ||||| | ||||||||| || || |||||||| || Sbjct 86838 ATGCATGTTCGTGTATTTGGCACCAAAATGGCGCCATTGGAAACCATAGACCGGTCCAAG 86779 Query 27546 GTCTCCCTCTTCCCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 27604 ||||| | |||| ||| || || || || |||||| | || | || || ||| Sbjct 86778 ATCTCCTACCTCCC-GTGACTGCAATCCTCTACTGTCCAGGTACTCACGCGATCCATTGC 86720 Query 27605 CGTCCCAGATCTTTACCCCCTTCT-CGGAGAGC-TCTTTGGAGTTTGTGGACCCTCTGAC 27662 |||||||||| | | |||||| | || ||| | | || | | ||| || || | Sbjct 86719 CGTCCCAGATATGAATATCCTTCTGCTGA-AGCGTGTGTGCA-CTCGTGTCGCCACTAAT 86662 Query 27663 GAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAGGG 27721 ||||||||||||||||||| | || | ||| || |||||||| ||||| || | || Sbjct 86661 GAACCACAGCAGCTCCTCCGCCACACCTCGCCAGAATACCCTCTTAGTCGTCAGCAACGG 86602 Query 27722 GAA---ACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCG 27778 ||| | ||| || | || | | || ||||| ||||| || |||| |||| Sbjct 86601 GAATACATTGTTCC-TCAGACTAAATCTCATCTGAGCCCCAAAAACCGACAGCGTCCCCG 86543 Query 27779 TGCCCGTCCTGTCTCC 27794 | ||||| | |||||| Sbjct 86542 TTCCCGTTCGGTCTCC 86527 >seq60 Length=68751 Score = 93.3 bits (102), Expect = 3e-14 Identities = 174/256 (68%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 44826 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 44885 |||||||||| | | || ||||| | |||| || | |||||| || | | ||| Sbjct 19090 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCCAGGATGAGCTGTGCCACTCGGTC 19149 Query 44886 GCCCCTCTTGACCCGAAAGGGGTTGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 44945 || | |||||| | ||| | | | ||| ||||| || ||||| | |||||| Sbjct 19150 CCCACGCTTGACGGGGAAGTCTTCGGGCGAGTGGTTGAACAGGATCACGCCAACGTTGCC 19209 Query 44946 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 45005 | |||||||| ||| | || ||||| || ||| || || || ||||| |||||||| Sbjct 19210 GCGGTAGTCGGCGTCGATGACACCGGCGCCAGTGTCGATGAACTTCTTCAGTGCCAGGCC 19269 Query 45006 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGACCAGGTCCGTCTT 45065 || | || ||||| | | ||||| ||| ||||| | ||||||||||||||| Sbjct 19270 AGAGCGAGGCGCCACGCGGGCGTAGCAGCCGTCGGGCACAGCGATGACCAGGTCCGTCTT 19329 Query 45066 TACCAGGGCCCTGCCT 45081 || || || ||||| Sbjct 19330 GACGAGCCCCTTGCCT 19345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369480062698406