Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq652 93.3 2e-14 >seq652 Length=20755 Score = 93.3 bits (102), Expect = 2e-14 Identities = 188/274 (69%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 31005 CCATGCACATGTGTCGCGCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGA 31064 ||||||||||||| |||| |||||| || | |||||||||| || | | | | Sbjct 12849 CCATGCACATGTGCGTGGCCTCAATGACGACCGCCACGCCCTTGGGCTCAATGACGCCCA 12790 Query 31065 ACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACA 31124 | |||| ||||||||| | || || | |||||||| ||||| || | || ||| Sbjct 12789 TGATAGCGTTCGCGATCTGCTTGGTCAGTCTCTCCTGCACCTGCAGACGTCTAGAGAACA 12730 Query 31125 TGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGA 31184 || || || | |||||||| || |||| | ||||| || || |||| || Sbjct 12729 CCTCGCTCACTCGAGCGAGCTTGCTGAGCCCCAGCACTTTGCCGTTGGGGATATAGCCGA 12670 Query 31185 TCGTG-ACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGGGAT 31242 | ||| || |||| || |||| | | ||| |||||||| ||| ||||| | | ||| Sbjct 12669 T-GTGCACTTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATG-GAGTACAGGTCGAT 12612 Query 31243 GTCGCGCACCGTCACCATCTGGTCATGCTTCTCC 31276 ||| ||||| | ||||||| ||| || | |||| Sbjct 12611 GTCCCGCACGATGACCATCTCGTCGTGGTCCTCC 12578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187276197790336