Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq290 138 3e-27 seq911 129 1e-24 seq2038 122 2e-22 >seq290 Length=35206 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || |||||||| || || ||||| || ||| Sbjct 15128 CAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCGGAC 15187 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||| || || ||||| ||||| || ||||||||| Sbjct 15188 TCGATCGACAACGTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCAGCAA 15247 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || | ||||| ||| || ||| || Sbjct 15248 CGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAACATC 15307 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || |||||||| || Sbjct 15308 CAGAAGGAGTCGACGCTGCATCTGGT 15333 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || |||||||| || || ||||| || ||| Sbjct 14672 CAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCGGAC 14731 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||| || || ||||| ||||| || ||||||||| Sbjct 14732 TCGATCGACAACGTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCAGCAA 14791 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || | ||||| ||| || ||| || Sbjct 14792 CGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAACATC 14851 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 14852 CAGAAGGAGTCGACGCTGCACCTGGT 14877 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || |||||||| || || ||||| || ||| Sbjct 14900 CAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCGGAC 14959 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||| || || ||||| ||||| || ||||||||| Sbjct 14960 TCGATCGACAACGTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCAGCAA 15019 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || | ||||| ||| || ||| || Sbjct 15020 CGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAACATC 15079 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 15080 CAGAAGGAGTCGACGCTGCACCTGGT 15105 >seq911 Length=16908 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || |||||||| || || ||||| || ||| Sbjct 5988 CAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 6047 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || || |||||||| ||||| ||||| || |||||||| Sbjct 6048 TCGATCGACAACGTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCAGCAG 6107 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||||||||| || ||||| || || || | || | || || ||| || Sbjct 6108 CGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAACATC 6167 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 6168 CAGAAGGAGTCGACGCTGCACCTGGT 6193 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || |||||||| || || ||||| || ||| Sbjct 6216 CAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 6275 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || || |||||||| ||||| ||||| || |||||||| Sbjct 6276 TCGATCGACAACGTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCAGCAG 6335 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||||||||| || ||||| || || || | || | || || ||| || Sbjct 6336 CGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAACATC 6395 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 6396 CAGAAGGAGTCGACGCTGCACCTGGT 6421 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || |||||||| || || ||||| || ||| Sbjct 6444 CAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 6503 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || || |||||||| ||||| ||||| || |||||||| Sbjct 6504 TCGATCGACAACGTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCAGCAG 6563 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||||||||| || ||||| || || || | || | || || ||| || Sbjct 6564 CGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAACATC 6623 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 6624 CAGAAGGAGTCGACGCTGCACCTGGT 6649 >seq2038 Length=6223 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || ||||| || ||||| || || ||||| || ||| Sbjct 615 CAGATCTTTGTGAAGACCCTGACGGGAAAGACCATCACGCTGGACGTGGAGCCGTCCGAC 674 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||| || || ||||| || || || |||||||| || |||||||| || |||||||| Sbjct 675 AGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGACCAGCAG 734 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || | || || ||| || Sbjct 735 CGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCGGACTACAACATC 794 Query 178104 CAAAA 178108 || || Sbjct 795 CAGAA 799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203638262171044