Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq94487 127 2e-24 seq98218 96.9 4e-15 >seq94487 Length=3660 Score = 127 bits (140), Expect = 2e-24 Identities = 277/409 (68%), Gaps = 12/409 (3%) Strand=Plus/Minus Query 17007 CGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGA 17066 |||| || || ||| || ||||| || || ||||| | ||| || || | | || Sbjct 550 CGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGA 491 Query 17067 ACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACG 17126 |||| || || ||||| || ||||| |||| ||||||||| | | || || | ||||| Sbjct 490 ACGAGCCCGAGAAGAAGATGCCCTCCACGGCTGCAAACGCCAGCAGACGCTCCGGGTACG 431 Query 17127 TCGCGTCTTT---GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAAT 17183 || || ||| | ||| || || |||| | ||||| | ||| | || Sbjct 430 ACGACACTCGCGGGTTGCA---CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACG 374 Query 17184 CCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTA 17242 ||||| || ||||| | | | || || ||| || | || | || ||||| Sbjct 373 GGATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCC-GTCGCATCCTTGATGTACGTG 315 Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302 || ||||| || ||||| || ||||| |||||||| ||||| |||||||| ||||| Sbjct 314 TCAATGAGCAGCGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGAAAACCGTAG 255 Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGT 17360 ||||| ||||| |||| | || || || | ||| |||| || || || |||| Sbjct 254 AAGCAGCGGGCCTCCGGCACCTGCACCTCATTGCTGAA--GTTCATGGCCAGGTTCTCGT 197 Query 17361 TCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 |||||||||||||||| || ||||| || |||| | ||||| ||||| Sbjct 196 TCACGATGCCGTCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 148 Score = 113 bits (124), Expect = 5e-20 Identities = 133/178 (75%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| || ||||| || |||| || ||||| |||||||| ||||| ||||| Sbjct 3253 ATGTACGTGTCAATGAGCAGCGAATACACCTCCGAGTGGATGTTCTCGATGGCGATCTGG 3194 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTA 17351 || ||||| ||||| ||||| |||| | || ||||| | ||| |||| || | Sbjct 3193 AAACCGTAGAAGCAGCGGGCCTCCGGCACCTGCACTTCATTGCTGAA--GTTCATGGCCA 3136 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 | || |||||||||||||||||||| |||||||| || |||| | ||||| ||||| Sbjct 3135 GGTTCTCGTTCACGATGCCGTCGCTGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAA 3078 >seq98218 Length=3782 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317 |||| || ||||| |||||||| || || ||||| || ||||| ||||| ||||| ||| Sbjct 2335 TACACCTCCGAGTGGATGTTCTCGATCGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCC 2394 Query 17318 GCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCCGTCGC 17375 | || || ||||| | ||| |||| || || || ||||||||||||||||| | Sbjct 2395 GGTACCTGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCGTCAC 2452 Query 17376 TCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 | || ||||| || |||| | ||||| ||||| Sbjct 2453 TGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 2486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516779153782320