Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq94487 111 2e-19 seq98218 105 7e-18 >seq94487 Length=3660 Score = 111 bits (122), Expect = 2e-19 Identities = 257/379 (68%), Gaps = 10/379 (3%) Strand=Plus/Minus Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAATATACCCTCAAC 16332 || || ||||| | |||||| || | |||| || || ||||| ||||| || ||||| || Sbjct 521 CCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAACGAGCCCGAGAAGAAGATGCCCTCCAC 463 Query 16333 AGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CA-TCTTTATTACGAATCCATTTC 16390 | |||||| || | | || |||| ||||| | || || | | ||| || Sbjct 462 GGCTGCAAACGCCAGCAGACGCTCCGGGTACGACGACACTCGCGGGTTGCA--CCACTTG 405 Query 16391 TGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTC 16450 | |||| | ||||| | || | ||| ||||| || ||||| | || | Sbjct 404 AGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCAGGTGG 345 Query 16451 TCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGT 16510 || || ||| ||| | || ||||| ||||| || | ||||| || ||||| Sbjct 344 TCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCCGAGTGG 285 Query 16511 ATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCC 16570 |||||||| ||||| |||||||| || |||||||| || ||||||| | || || || Sbjct 284 ATGTTCTCGATGGCGATCTGAAAACCGTAGAAGCAGCGGGCCTCCGGCACCTGCACCTCA 225 Query 16571 ACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACG 16628 | || |||| ||||||||||| |||||||| ||||| || ||||| || || | Sbjct 224 TTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAAGG 167 Query 16629 CCAATATGTGCTTAATGAA 16647 ||| | |||||| ||||| Sbjct 166 CCAGCACGTGCTTGATGAA 148 Score = 100 bits (110), Expect = 3e-16 Identities = 130/178 (73%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || ||||| ||||| || | |||| || ||||| |||||||| ||||| ||||| Sbjct 3253 ATGTACGTGTCAATGAGCAGCGAATACACCTCCGAGTGGATGTTCTCGATGGCGATCTGG 3194 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCA 16589 || || |||||||| || ||||||| | || ||||| | || |||| |||| Sbjct 3193 AAACCGTAGAAGCAGCGGGCCTCCGGCACCTGCACTTCATTGCTGAA--GTTCATGGCCA 3136 Query 16590 GGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 ||||||| |||||||| ||||| || || || || || |||| | |||||| ||||| Sbjct 3135 GGTTCTCGTTCACGATGCCGTCGCTGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAA 3078 >seq98218 Length=3782 Score = 105 bits (116), Expect = 7e-18 Identities = 117/154 (76%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 |||| || ||||| |||||||| || || ||||| || || |||||||| || |||||| Sbjct 2335 TACACCTCCGAGTGGATGTTCTCGATCGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCC 2394 Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACCGTCAC 16613 | || || ||||| | || |||| ||||||||||| |||||||| ||||||| Sbjct 2395 GGTACCTGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCGTCAC 2452 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 | ||||| || || |||| | |||||| ||||| Sbjct 2453 TGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 2486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510657033629680