Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq86700 253 2e-62 seq76103 221 1e-52 seq72444 208 9e-49 seq57059 197 2e-45 >seq86700 Length=3918 Score = 253 bits (280), Expect = 2e-62 Identities = 490/710 (69%), Gaps = 15/710 (2%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||| ||||||||||| || ||||| || || || | ||||||| || || || Sbjct 2168 AGCGGCTCGACGTGGTTGAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 2109 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG-GTCAGCAGGGAGTAGCTGGCTATGTT 145802 |||| || || | | || || | || || | || |||| | ||||||||| || || Sbjct 2108 GGCTTCAGTCCACTCACCTGTGCTATCA-GTCGCGTAAGCAACGCGTAGCTGGCGATATT 2050 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC 145862 ||| ||||| || || |||||||| ||||||||||||||| ||||||||| | ||| || Sbjct 2049 GAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCTCC 1990 Query 145863 GCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 | | ||||||||||||||||| | | |||||| ||||| || ||||| | || || Sbjct 1989 GTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATC 1930 Query 145923 CGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTG-CTCTCGGGGTTCCTCTTGATCTCCC 145981 |||||| ||||| || | || |||| || | | | || || ||| | | || Sbjct 1929 CGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTC-GGATTCGTGCGCAGCTTGT 1871 Query 145982 CTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACG 146040 || | || ||||||||||||||||||| || ||| || | | || | |||| | Sbjct 1870 GAATAACCTCGGTGAGCTGGTCCACGCCCTGGCCAGTGTAGTC-GGCGTGCATGTCCGTG 1812 Query 146041 TACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCC 146100 ||| |||||| ||||| | ||||||||| |||||||| || || ||||| || ||| Sbjct 1811 TACTTGGCCCCAAAGTGACGCCACTGGAAGCCGTAGACCGGTCCAAGGTCGCCAACTTCC 1752 Query 146101 CTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTG 146160 | | ||| || | | | || | ||||| ||||| ||| |||||||||| | | Sbjct 1751 CGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGACCCATTGCCGTCCCAGATGTGG 1692 Query 146161 ACGCCCCTC-GCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTC 146219 | | || || || | ||| | | |||| || ||||||||||| |||||||| Sbjct 1691 ATGTCCTTCTGCTG-CAGCGTGTGCGCACTCGTGTCTCCACTGATGAACCACAGCAGCTC 1633 Query 146220 TTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGCCCCG 146276 || || || | ||||||||| | |||||| || |||| |||||| | | ||| Sbjct 1632 CTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAACGGGAACACGTTGTCCCT 1573 Query 146277 CAGGGAGTACTTGGCCTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCC--TGTCC 146334 ||| | || ||| | |||||||| ||||| || ||| ||||| | | ||| Sbjct 1572 CAGACTGAACCGCATCTGCGCTCCGAAGACCGACAGCGTCCCCGTTCCCGTGCGATCTCC 1513 Query 146335 CCCCTGCGCACCCCGTTCGCCAGGATCTCCCTGACGGTGTTGAGGTACTG 146384 | || ||| || | | |||||||| || || || ||||||||| Sbjct 1512 GCGCTTCGCTCCTTGGT--TCAGGATCTTCCGGATCAAGTCGAGGTACTG 1465 >seq76103 Length=1730 Score = 221 bits (244), Expect = 1e-52 Identities = 428/624 (69%), Gaps = 6/624 (1%) Strand=Plus/Plus Query 145648 GGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAG 145707 ||||| || || || | | || ||||| || || ||||| |||||||| || || Sbjct 1033 GGAAATGGGCGCGGCGTTCGAGTAAGCTGCTTCTGGAGCGGCTCGACGTGGTTCAGATAC 1092 Query 145708 ACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCG 145767 ||||| || || || | ||||||| || || || |||| || || | | || || Sbjct 1093 ACGTGGGCATCGCCAATAACGTGGACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCT 1152 Query 145768 ACCATGTAG-GTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTC 145826 || | || | || |||| | ||||||||| || || || ||||| || || |||||||| Sbjct 1153 ACAA-GTCGCGTGAGCAACGCGTAGCTGGCAATATTAAACGGCACGCCAAGTCCCATGTC 1211 Query 145827 CCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAG 145886 ||||||||||||||| |||||| || | ||| ||| | ||||||||||||||||| | Sbjct 1212 GGCCGAGCGCTGGTACATCTGGCACGACAACTCGCCGTCGGCCACGTAGAACTGGCAGAA 1271 Query 145887 GAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGAC 145946 | |||||| ||||| || ||||| || |||||||| ||||| || | || || Sbjct 1272 CATGTGGCACGGCGGGAGTGCCATCTTATTGAGATCCGCCGGATTCCACGCCGACAGCAC 1331 Query 145947 GAGCCTCCTG-CTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCA 146005 || || | | | ||| || ||| | | || || | || ||||||||||| Sbjct 1332 GATCCGACGGTCGCTC-GGATTCGTGCGCAGCTTGTGAATGACCTCGGCGAGCTGGTCCA 1390 Query 146006 CGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACT 146065 ||||||| || ||| || | || |||| |||| |||||| || || | ||||| Sbjct 1391 CGCCCTGACCAGTGTAGTCGGCGTTCATGTCCGTGTACTTGGCCCCAAAATGACGCCACT 1450 Query 146066 GGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGA 146125 |||| |||||||| || || ||||| || |||| | ||| || | | | | Sbjct 1451 GGAAGCCGTAGACCGGTCCGAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCA 1510 Query 146126 GGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTC-GCGGAGAGCTCATTG 146184 | | || |||||||| ||| |||||||||| | || | || || || | ||| | Sbjct 1511 GATACTCTCGGGACCCATTGCCGTCCCAGATGTGGATGTCCTTCTGCTG-CAGCGTGTGC 1569 Query 146185 GAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACC 146244 | |||| || ||||| ||||| |||||||| || || || | ||||||||| Sbjct 1570 GCACTCGTGTCACCACTGATAAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACG 1629 Query 146245 CTCTTGGTGGTCAGCAGGGGGAAC 146268 | |||||| || |||| |||||| Sbjct 1630 CGCTTGGTCGTGAGCAACGGGAAC 1653 >seq72444 Length=2747 Score = 208 bits (230), Expect = 9e-49 Identities = 466/688 (68%), Gaps = 19/688 (3%) Strand=Plus/Plus Query 145708 ACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCG 145767 ||||| || || || | ||||||| || || || |||| || || | | || || Sbjct 435 ACGTGGGCATCGCCAATAACGTGGACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCT 494 Query 145768 ACCATGTAG-GTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTC 145826 |||| || | || |||| | ||||||||| || ||||| ||||| || || |||||||| Sbjct 495 ACCA-GTCGCGTAAGCAACGCGTAGCTGGCGATATTGAACGGCACGCCAAGTCCCATGTC 553 Query 145827 CCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAG 145886 |||| |||||||||| ||||||||| | ||| ||| | ||||||||||||||||| | Sbjct 554 GGCCGAACGCTGGTACATCTGGCAGGACAACTCGCCGTCGGCCACGTAGAACTGGCAGAA 613 Query 145887 GAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGAC 145946 | |||||| ||||| || ||||| | || |||||||| ||||| || | || || Sbjct 614 CATGTGGCACGGCGGGAGCGCCATCTCATTGAGATCCGCCGGATTCCACGCCGACAGCAC 673 Query 145947 GAGCCTCCTG-CTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCA 146005 || || | | | || || || | | || | || | || ||||||||||| Sbjct 674 GATCCGACGGTCGGTC-GGATTTGTGCGCAGCTTGTCAATAACCTCAGCGAGCTGGTCCA 732 Query 146006 CGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGTACGCGGCCCCGAAGTGCCTCCAC 146064 ||||||| || ||| || | | || | |||| |||| |||||| || || | |||| Sbjct 733 CGCCCTGACCAGTGTAGTC-GGCGTGCATGTCCGTGTACTTGGCCCCAAAATGACGCCAC 791 Query 146065 TGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCG 146124 ||||| |||||||| || || ||||| || |||| | ||| || | | | Sbjct 792 TGGAAGCCGTAGACTGGTCCAAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCC 851 Query 146125 AGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTG 146184 || | ||||| || || ||| |||||||||| | || || || | ||| | Sbjct 852 AGATACTCCCGCGATCCATTGCCGTCCCAGATGTGGATATCCTTCTCCTGCAGCGTGTGC 911 Query 146185 GAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACC 146244 | |||| || ||||||||||| |||||||| || || || | ||||||||| Sbjct 912 GCACTCGTGTCGCCACTGATGAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACG 971 Query 146245 CTCTTGGTGGTCAGCAGGGGGAAC---TGGCCCCGCAG---GGAGTACTTGGCCTGGTCC 146298 | |||||| || |||| |||||| | | ||| ||| | || | | ||| | Sbjct 972 CGCTTGGTCGTGAGCAACGGGAACACGTTGTCCCTCAGACTGAAGCGCAT---CTGCGCT 1028 Query 146299 CCGAAGACGGACAGGGTGCCCACGCCCGTCC--TGTCCCCCCTGCGCACCCCGTTCGCCA 146356 |||||||| ||||| || ||| ||||| | | ||| | || || | || | | || Sbjct 1029 CCGAAGACCGACAGCGTCCCCGTTCCCGTGCGATCTCCGCGCTTCG--CTCCTTGGGTCA 1086 Query 146357 GGATCTCCCTGACGGTGTTGAGGTACTG 146384 |||||| || || || ||||||||| Sbjct 1087 GGATCTTCCGGATCAAGTCGAGGTACTG 1114 >seq57059 Length=1150 Score = 197 bits (218), Expect = 2e-45 Identities = 318/449 (71%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 145648 GGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAG 145707 ||||| || || || | | || ||||| || || ||||| ||||||||||| || Sbjct 664 GGAAACGGGCGCGGCGTTCGAGTAAGCTGCTTCTGGAGCGGCTCGACGTGGTTGAGATAC 723 Query 145708 ACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCG 145767 ||||| || || || | ||||||| || || || |||| || || | | || || Sbjct 724 ACGTGGGCATCGCCAATAACGTGGACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCT 783 Query 145768 ACCATGTAG-GTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTC 145826 |||| || | || |||| | ||||||||| || ||||| ||||| || || |||||||| Sbjct 784 ACCA-GTCGCGTAAGCAATGCGTAGCTGGCGATATTGAACGGCACGCCAAGTCCCATGTC 842 Query 145827 CCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAG 145886 ||||||||||||||| ||||||||| | ||| ||| | ||||||||||| || || | Sbjct 843 AGCCGAGCGCTGGTACATCTGGCAGGACAACTCTCCGTCGGCCACGTAGAATTGACAGAA 902 Query 145887 GAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGAC 145946 | |||||| ||||| || ||||| | || |||||||| ||||| || | || || Sbjct 903 CATGTGGCACGGCGGGAGCGCCATCTCATTGAGATCCGCCGGATTCCACGCCGACAGCAC 962 Query 145947 GAGCCTCCTG-CTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCA 146005 | || | | | || || || | | || | || | || ||||||||||| Sbjct 963 AATCCGACGGTCGGTC-GGATTTGTGCGCAGCTTGTCAATAACCTCAGCGAGCTGGTCCA 1021 Query 146006 CGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGTACGCGGCCCCGAAGTGCCTCCAC 146064 ||||||| || ||| |||| | || | |||| |||| |||||| || || | |||| Sbjct 1022 CGCCCTGACCAGTGTAGTCTG-CATGCATGTCCGTGTACTTGGCCCCAAAATGACGCCAC 1080 Query 146065 TGGAACCCGTAGACGGGCCCCAGGTCCCC 146093 ||||| |||||||| || || ||||| || Sbjct 1081 TGGAAGCCGTAGACCGGTCCAAGGTCGCC 1109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589202940514960