Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq102828 152 3e-32 seq96335 150 1e-31 seq88141 136 3e-27 seq52299 91.5 1e-13 seq90412 87.8 1e-12 seq107323 86.0 4e-12 seq49943 86.0 4e-12 seq72085 84.2 1e-11 >seq102828 Length=2266 Score = 152 bits (168), Expect = 3e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||||| || || ||||| |||||||||||| | Sbjct 1168 CCACCACGCAGACGCAGCACCAGGTGTAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 1227 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || |||| || | ||||||||| ||||| || || |||||||||||| || Sbjct 1228 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 1287 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||||||||| | | | | ||||| || | || || ||| Sbjct 1288 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCTGACGGCTCCACG 1347 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || ||||| || || || ||||| ||||||||||| Sbjct 1348 TCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1394 >seq96335 Length=3561 Score = 150 bits (166), Expect = 1e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| |||||||| | |||||||||||| | || || ||||| |||||||||||| Sbjct 1095 TCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 1036 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 |||| || |||| || | ||||||||| ||||| || || ||||||||||| | ||| Sbjct 1035 CAGCGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 976 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || ||||||||| ||||||||||| | | | | ||||| || | || || | Sbjct 975 G-ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCA 917 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| | |||||| || ||||| || | || ||||| ||||||||||| Sbjct 916 CGTCGAGCGTGATCGTCTTGCCCGTCANNGTCTTCACGAAGATCTGCAT 868 Score = 104 bits (114), Expect = 2e-17 Identities = 114/149 (77%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||||||||| | || || ||||| |||||||||||| | Sbjct 866 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 807 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| || |||| || | ||||||||| ||||| || || ||||||||||| | |||| Sbjct 806 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 747 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCT 34310 | || ||||||||| |||||||||| Sbjct 746 -ATGCCCTCCTTGTCCTGGATCTTTTGCT 719 Score = 96.9 bits (106), Expect = 2e-15 Identities = 98/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 34266 GCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATC 34324 |||||||||| | |||| | || ||||||||| ||||||||||| | | | | ||| Sbjct 573 GCTGCTGGTCAGGCGGG-ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATC 515 Query 34325 GAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATC 34384 || || | || || ||||||| |||||| || ||||| || ||||||||||| |||||| Sbjct 514 GAGTCCGACGGCTCCACGTCCAGCGTGATAGTCTTGCCCGTCAGAGTTTTCACGAAGATC 455 Query 34385 TGCAT 34389 ||||| Sbjct 454 TGCAT 450 >seq88141 Length=1707 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||||||||| || | || || ||||| |||||||||||| Sbjct 963 TCCACCACGAAGGCGCAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 904 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 |||| || |||| || | ||||||||| || || || || |||||||||||| || Sbjct 903 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGG 844 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||||||||| | | | | ||||| || | || || || Sbjct 843 GATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 784 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| | |||||| || ||||| || || || ||||| ||||||||||| Sbjct 783 GTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 736 >seq52299 Length=3408 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||||||| | || || || ||||| ||||||||||| || Sbjct 663 CCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAA 604 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 603 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 551 >seq90412 Length=3393 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||| |||||||||| ||| | ||| ||||| ||| || |||||||| || Sbjct 2341 CCACCCCGCAATCTCAGCACCAAGTGCAGAGTGCTTTCGCACTGAATATTGTAGTCCGAG 2400 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 |||| || |||| || | ||||||||||| ||||||| ||||||||| || Sbjct 2401 AGCTTTCGACCGTCTTCAAGTTGCTTGCCTGCAAAAATGATCCGCTGCTGATC 2453 >seq107323 Length=4802 Score = 86.0 bits (94), Expect = 4e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 34265 CGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTAT 34323 ||||||||||| | |||| | || ||||||||| || || ||||| | || | | || Sbjct 4393 CGCTGCTGGTCAGGCGGG-ATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAAT 4451 Query 34324 CGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGAT 34383 |||| || || ||||||| ||||||||| ||||| || || || ||||||||||| Sbjct 4452 GCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGAT 4511 Query 34384 CTGCAT 34389 |||||| Sbjct 4512 CTGCAT 4517 >seq49943 Length=3916 Score = 86.0 bits (94), Expect = 4e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 34265 CGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTAT 34323 ||||||||||| | |||| | || ||||||||| || || ||||| | || | | || Sbjct 3454 CGCTGCTGGTCAGGCGGG-ATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAAT 3512 Query 34324 CGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGAT 34383 |||| || || ||||||| ||||||||| ||||| || || || ||||||||||| Sbjct 3513 GCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGAT 3572 Query 34384 CTGCAT 34389 |||||| Sbjct 3573 CTGCAT 3578 >seq72085 Length=9321 Score = 84.2 bits (92), Expect = 1e-11 Identities = 124/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 34169 CGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGA 34228 ||||||| ||| |||||||| | ||| || ||||| |||||||||||| |||| Sbjct 1021 CGCAGCCACAGTACCAGGTGCATCGTAAATTGCTTCTGGATGTTGTAGTCGATCAGCGTG 1080 Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288 || |||| |||| | ||||||| ||||| || || |||| ||| | || | || | Sbjct 1081 TGGACGTCCTCCAGCAGCTTGCCAGCGAAGATCAGATGCTGGTGGCCAGGCGGAATGCCC 1140 Query 34289 TCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGT 34343 |||||| | || || ||||| | | | | ||||| ||| || |||||||| Sbjct 1141 TCCTTGAATTCGATTTTCTGCTTCACGTTGTCGATCGAGTCGATC--TTCGACGT 1193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322605515733440