Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq73440 140 7e-28 seq98218 98.7 2e-15 seq110277 93.3 9e-14 seq94487 89.7 1e-12 >seq73440 Length=3747 Score = 140 bits (154), Expect = 7e-28 Identities = 268/390 (69%), Gaps = 12/390 (3%) Strand=Plus/Minus Query 253994 TGGCGACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCAT 254053 |||| | || ||||| ||| | ||| |||| ||||| || || ||||||||||| ||||| Sbjct 2109 TGGCCAGCTGCCTCACTTGTTGTTCTACGGGCCTCCAGGCACGGGCAAGACGTCCACCAT 2050 Query 254054 CCTGGCGCTGGCCCGAACCCTGTTGGGCGAGGGGAAC---ATGAGAGAGCGCGTGCTCGA 254110 ||||| ||| || || || ||| || | | || | ||| | || || Sbjct 2049 TGTGGCGGTGGGGCGCCAGCTCTTCGGCCCGGACTTCCGCAAGAATGGCCGCTTCCTGGA 1990 Query 254111 GCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC 254170 ||||||||| || ||||| || || | | || || ||||| ||| |||||| ||| | Sbjct 1989 GCTGAACGCATCGGACGATCGAGGCATTAAGGTGGTGCGCGAGAAGGTCAAGAGCTTCGC 1930 Query 254171 CAAGATGTCGATTT-CGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGG 254229 | || | || | || ||| | ||| ||||| || ||| || | | || | Sbjct 1929 CCAGGGTGCCATCAGCACCG--CCAGC--GGCCTCCCGCCCTTTAAGATCATTGTKCTCG 1874 Query 254230 ACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGC 254289 | ||||| ||| ||||||||| |||||||||||| || || || || | |||||||| Sbjct 1873 ATGAGGCCGACTCCATGACGGGCGACGCGCAGTCGGCACTGCGTCGTATGATGGAGAACT 1814 Query 254290 ACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTG--TCGAAGATCATCGCCCC 254347 |||| || ||||| || ||||| | || ||||| ||| ||| | |||| | || Sbjct 1813 ACTCMAAGGTCACGCGCTTCTGCCTCATCTGTAACTATGTGAGTCGCA--TCATTGAGCC 1756 Query 254348 GCTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 ||||||| || ||||||||||| || || Sbjct 1755 TGTGGCTTCCCGATGCGCCAAGTTCCGTTT 1726 >seq98218 Length=3782 Score = 98.7 bits (108), Expect = 2e-15 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| |||||||||||||| ||||| || Sbjct 1568 ACACCCGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGC 1627 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTT-GTCGTACCCCAG 157362 || |||||||||||||| ||||| ||||| |||||| | ||| | | | ||||| Sbjct 1628 GAGATCATGTCCATCCAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACA-CCCAG 1686 Query 157363 CTGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACT 157400 | || |||| ||| ||||| |||| |||||||| Sbjct 1687 CGAGTACAGCAGACGGTCGGCCACGAACTCGATGTACT 1724 >seq110277 Length=6173 Score = 93.3 bits (102), Expect = 9e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| |||||||||||||| ||||| || Sbjct 5377 ACACCCGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGC 5436 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTT-GTCGTACCCCAG 157362 || |||||||||||||| ||||| ||||| |||||| | ||| | | | || || Sbjct 5437 GAGATCATGTCCATCCAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACA-CCTAG 5495 Query 157363 CTGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACT 157400 | || |||| ||| ||||| |||| |||||||| Sbjct 5496 CGAGTACAGCAGACGGTCGGCCACGAACTCGATGTACT 5533 >seq94487 Length=3660 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| |||||||||||||| ||||| || Sbjct 1117 ACACCCGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGC 1058 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTT 157332 || |||||||||||||| ||||| ||||| Sbjct 1057 GAGATCATGTCCATCCAGTCGAACGGGTT 1029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072136478306432