Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq102828 140 3e-28 seq88141 140 3e-28 seq96335 132 4e-26 seq107323 89.7 4e-13 seq49943 89.7 4e-13 seq52299 87.8 1e-12 >seq102828 Length=2266 Score = 140 bits (154), Expect = 3e-28 Identities = 160/213 (75%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| ||||| |||||||||||||||||||||| |||| |||| |||| || Sbjct 1186 ACCAGGTGTAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCA 1245 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| |||||||| || | |||||||||||| Sbjct 1246 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 1305 Query 45248 ATTTTTTGCTTAAC--CGCCG--CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 || |||||||| || | || | | ||| | |||||| || | || ||||| Sbjct 1306 ATCTTTTGCTTGACGTTGTCGATCGAGTCTGAC----GGCTCCACGTCGAGCGTGATCGT 1361 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||||||| |||||||| ||||| ||||| Sbjct 1362 CTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1394 >seq88141 Length=1707 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||||| |||||||||||||||||||||| |||| |||| |||| || Sbjct 944 ACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCA 885 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| |||||||| || | |||||||||||| Sbjct 884 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 825 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || |||||||| || | | |||| |||||| || | || ||||||||| Sbjct 824 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTCTTG 765 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||||||| |||||||| ||||| |||||| Sbjct 764 CCCGTCAGCGTCTTCACGAAGATCTGCATG 735 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| |||||| ||||||||||||||| |||| |||| |||| || Sbjct 716 ACCAGGTGCAGCGTCGACTCCTTTTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCA 657 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || || || || || |||| ||||| |||||||| || Sbjct 656 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGG 616 >seq96335 Length=3561 Score = 132 bits (146), Expect = 4e-26 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| |||||||||||| |||| ||| |||| || Sbjct 1076 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGCCCGTCCTCG 1017 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | |||||||||||| Sbjct 1016 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 957 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || |||||||| || | | |||| |||||| || | || ||||||||| Sbjct 956 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTG 897 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| |||||||| ||||| |||||| Sbjct 896 CCCGTCANNGTCTTCACGAAGATCTGCATG 867 Score = 100 bits (110), Expect = 2e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| |||||||||||| |||| ||| |||| || Sbjct 848 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGCCCGTCCTCA 789 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | |||||||||||| Sbjct 788 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 729 Query 45248 ATTTTTTGCT 45257 || ||||||| Sbjct 728 ATCTTTTGCT 719 >seq107323 Length=4802 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 45212 CGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACG 45271 ||||| ||||| || || | |||||||||||| ||||| ||||| || | | | Sbjct 4393 CGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATG 4452 Query 45272 CTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATT 45331 ||||| |||||| |||| || || |||||||||||||| |||||||||||||| Sbjct 4453 CTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATC 4512 Query 45332 TGCATGTTGCCTCAATA 45348 |||||| | || |||| Sbjct 4513 TGCATGATTCCCTAATA 4529 >seq49943 Length=3916 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 45212 CGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACG 45271 ||||| ||||| || || | |||||||||||| ||||| ||||| || | | | Sbjct 3454 CGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATG 3513 Query 45272 CTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATT 45331 ||||| |||||| |||| || || |||||||||||||| |||||||||||||| Sbjct 3514 CTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATC 3573 Query 45332 TGCATGTTGCCTCAATA 45348 |||||| | || |||| Sbjct 3574 TGCATGATTCCCTAATA 3590 >seq52299 Length=3408 Score = 87.8 bits (96), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||||||||||||||| ||||||||||| || ||| |||| ||| Sbjct 645 ACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCC 586 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || || |||||||| |||| ||||| ||||| || || Sbjct 585 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394504750177954