Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq110124 161 9e-35 seq88141 154 1e-32 seq102828 152 5e-32 seq96335 143 2e-29 seq107323 102 7e-17 seq49943 102 7e-17 seq102906 98.7 9e-16 >seq110124 Length=2655 Score = 161 bits (178), Expect = 9e-35 Identities = 292/418 (70%), Gaps = 12/418 (3%) Strand=Plus/Minus Query 22466 AACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCA 22525 |||||||| | || || ||||| | ||| |||||||| ||| |||| |||| || || Sbjct 808 AACTCGCCAGCCAGCACTCGGCGGTTGTACATGTTGGACGTGTACGGCTCGATGGACTCG 749 Query 22526 TTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTT 22585 ||||| || || ||||| || |||||||| |||||||| || |||| ||| |||||||| Sbjct 748 TTGTTGCCGAGGATCTGGGCCGTCGAAGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTG 689 Query 22586 CTCAAGCCGTGCTTTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAGATCGGACGG 22644 | || |||||||| || | ||| |||||| | | ||||| ||||| | | |||| Sbjct 688 CGCAGTCCGTGCTT-GATCACGTCCTCCTTGAGCGTAGCCCAGTTCCACATACCCGACGA 630 Query 22645 CG---TCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 || | || | ||||||| ||| | || || | ||| || || || ||| | Sbjct 629 CGGGGTGAC---GCCCCACATGTCGAACTGGAAGATGCCCTTGCTAGCAGGCGAGCCCTG 573 Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACGCGCCGT 22760 | |||| |||||||| || | | ||||| || || | || ||||| ||| || Sbjct 572 GAACGTCTCGTACGGGCCGAGTTCCTTGGCAATCTC-CATCGACGTCTCCATGGCGGCGA 514 Query 22761 AATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCA 22820 | || || ||||||||||| |||||||| | || ||| |||| ||| ||| | Sbjct 513 AGTAGATGGTCTCGAAGATGTTCTTGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACG-CG 455 Query 22821 TACG-CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT 22877 || ||| | | ||||||||||| | ||||| ||||| ||||| || || |||| Sbjct 454 TAGTTCATGAGGATAAACGCGTCCGCGAGGCCCTGGACGCCAATACCAATGGGGCGGT 397 >seq88141 Length=1707 Score = 154 bits (170), Expect = 1e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||||| | ||||| || ||||| Sbjct 735 CATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTC 794 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||| | ||||| || | || ||||||||| ||| | ||||||||||| Sbjct 795 GGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 854 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||| | || ||| | || ||||||| || || Sbjct 855 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAA 914 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || ||||| || |||||||| || Sbjct 915 CATTCAGAAGGAGTCGACGCTGCATCTGGTGCT 947 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATG 31360 |||||||||||||||||||| || || |||||||| ||| | || ||| | || || Sbjct 616 CCGCCCGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTG 675 Query 31361 AGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || ||||||||||| || ||||| || || ||||| || Sbjct 676 AGCGACTACAACATTCAAAAGGAGTCGACGCTGCACCTGGTGCT 719 >seq102828 Length=2266 Score = 152 bits (168), Expect = 5e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| |||||||| ||||||| || ||||| Sbjct 1394 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCA 1335 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || | || ||||||||| ||| | |||||||||||| Sbjct 1334 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 1275 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||||||||| ||| | || ||| | || ||||||| || ||| Sbjct 1274 CAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 1215 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || ||||| || || ||||| || Sbjct 1214 ATTCAGAAGGAGTCGACGCTACACCTGGTGCT 1183 >seq96335 Length=3561 Score = 143 bits (158), Expect = 2e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| |||||||| ||||||| || ||||| Sbjct 867 CATGCAGATCTTCGTGAAGACNNTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTC 926 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||| | ||||| || | || ||||||||| ||| | ||||| ||||| Sbjct 927 GGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 986 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| ||| | || ||| || ||||||| || || Sbjct 987 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGGCGCACGCTGAGCGACTACAA 1046 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || || ||||| || Sbjct 1047 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCT 1079 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||| ||| | ||||| |||||||||||||| || ||||||||||| ||| | || Sbjct 732 GGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGA 791 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||||| || ||||| || || || ||||| || || ||||| || Sbjct 792 GGACGGGCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCT 851 >seq107323 Length=4802 Score = 102 bits (112), Expect = 7e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| ||||| ||||| || ||||| | ||||| || || Sbjct 4521 AATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCC 4462 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||||| | || | ||||| |||| ||| ||||||||| ||| | ||||| || Sbjct 4461 GTCCGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGA 4402 Query 31309 CCAGCAGCG 31317 ||||||||| Sbjct 4401 CCAGCAGCG 4393 >seq49943 Length=3916 Score = 102 bits (112), Expect = 7e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| ||||| ||||| || ||||| | ||||| || || Sbjct 3582 AATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCC 3523 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||||| | || | ||||| |||| ||| ||||||||| ||| | ||||| || Sbjct 3522 GTCCGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGA 3463 Query 31309 CCAGCAGCG 31317 ||||||||| Sbjct 3462 CCAGCAGCG 3454 >seq102906 Length=6336 Score = 98.7 bits (108), Expect = 9e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||||||||| ||||| || ||||| | ||||| || |||||| Sbjct 124 ATGCAGATTTTCGTGAAGACTCTGACGGGCAAGACCATCACGCTTGACGTGGAGCCGTCC 65 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | || || |||| || ||||||||| ||| | ||||| |||||| Sbjct 64 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 5 Query 31313 CAGC 31316 |||| Sbjct 4 CAGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445106253394080