Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq72444 125 1e-23 >seq72444 Length=2747 Score = 125 bits (138), Expect = 1e-23 Identities = 428/651 (66%), Gaps = 16/651 (2%) Strand=Plus/Minus Query 35137 AGGAGTGAAGAAGGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAAT 35196 ||||| |||| | ||| | || ||||| || || || || | || ||| | || || Sbjct 1079 AGGAGCGAAGCGCGGAGATCGCACGGGAACGGGGACGCTGTCGGTCTTCGGAGCGCAGAT 1020 Query 35197 GAGGTTCTCTCTTCGAGACGACACTATTCCAGTT-CTCACTACCAAGAAAATTTTCTGGA 35255 | | ||| ||| | ||| || | |||| ||| ||||| |||||| | |||||| Sbjct 1019 GCGCTTCAGTCTGAGGGACAACG-TGTTCCCGTTGCTCACGACCAAGCGCGTCTTCTGGC 961 Query 35256 GAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATAC-AGA-CGCCAAAGAATT 35313 | || || | ||| || || |||||||||||| ||| | || || ||| | | | Sbjct 960 GCGGCGTGGCGGAGGAGCTGCTGTGGTTCATCAGTGGCGACACGAGTGCGCACACGC--T 903 Query 35314 GGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAG 35373 | ||||| | || ||||||||| ||| ||||| |||||||| | | |||||||| | Sbjct 902 GCAGGAGAAGGATATCCACATCTGGGACGGCAATGGATCGCGGGAGTATCTGGACAGTCG 843 Query 35374 AGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCA 35433 ||| | | | | || || || | ||||| || ||||| ||||| |||||||| Sbjct 842 AGGACTGCAGTCGCGGGAAGTTGGCGACCTTGGACCAGTCTACGGCTTCCAGTGGCGTCA 783 Query 35434 TTTTGGTGCTGAATA-TGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAAT 35492 |||||| || | || || || | |||| || ||||| |||| | || || Sbjct 782 TTTTGGGGCCAAGTACACGGACATGCAC-GCCGACTACACTGGTCAGGGCGTGGACCAGC 724 Query 35493 TGGCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGG 35552 | || | | | | | ||| | |||||| || | |||| | || ||| Sbjct 723 TCGCTGAGGTTATTGACAAGCTGCGCACAAATCCGACCGACCGTCGGATCGTGCTGTCGG 664 Query 35553 CATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATG-ACTGCTCAA 35611 | |||||||| |||||| | ||||| || || || ||||||||| |||| || Sbjct 663 CGTGGAATCCGGCGGATCTCAATGAGATGGCGCTCCCGCCGTGCCACATGTTCTGC-CAG 605 Query 35612 TTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCG 35669 || || ||||| | || || ||||| |||||| |||| ||||| || || ||| | Sbjct 604 TTCTACGTGGCCGACGGCGAGTTGTCCTGCCAGATGTACCAGCGTTCGGCCGACATG--G 547 Query 35670 GGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGC-CAGT 35728 | | |||||||| |||||||| || ||| | | || || | ||| | || ||| Sbjct 546 GACTTGGCGTGCCGTTCAATATCGCCAGCTACGCGTTGCTTACGCGACTGGTAGCGCAGG 487 Query 35729 ATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACAC 35779 ||||| || || || || |||||| ||| | | |||| || || ||| Sbjct 486 TGAGTGGG-CTGAAGCCTGGCGAGTTTGTCCACGTTATTGGCGATGCCCAC 437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988081862822670