Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq76103 201 1e-46 seq86700 199 3e-46 seq57059 194 1e-44 seq72444 188 6e-43 >seq76103 Length=1730 Score = 201 bits (222), Expect = 1e-46 Identities = 440/654 (67%), Gaps = 39/654 (6%) Strand=Plus/Plus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 |||||| || ||||| || | ||||| | | || || || |||||||| || Sbjct 1032 CGGAAATGGGCGCGGCGTTCGAGTAAGCTGCTTCTGGAGCGGCTCGACGTGGTTCAGATA 1091 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 |||||||| || || | ||| ||||| || || || |||| || | || || || Sbjct 1092 CACGTGGGCATCGCCAATAACGTGGACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGC 1151 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 | || ||| || | ||||||||||| || |||||||| || || || |||||||| Sbjct 1152 TACAAGTCGCGTGAGCAACGCGTAGCTGGCAATATTAAACGGCACGCCAAGTCCCATGTC 1211 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAA 21127 ||| || | |||||||| |||||| |||| ||| || |||||||| ||||| || || Sbjct 1212 GGCCGAGCGCTGGTACATCTGGCACGACAACTCGCCGTCGGCCACGTAGAACTGGCAGAA 1271 Query 21128 AACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAAC 21187 | ||| || || ||||| |||||| ||| ||||| || |||||||| ||| || Sbjct 1272 CATGTGGCACGGCGGGAGTGCCATCTTATTGAGATCCGCCGGATTCCACGCCGACAGCAC 1331 Query 21188 GATGCGCCGATCG-TGGG--------GCCGCCTGTTAATTAGATCCACCACGTAACGCAG 21238 ||| || || ||| | || || || ||| ||| | || | || || Sbjct 1332 GATCCGACGGTCGCTCGGATTCGTGCGCAGCTTGTGAATGA---CCTCGGCG------AG 1382 Query 21239 CTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATG 21298 ||||||||| |||||||| ||||| ||||| || |||||| ||||||||||| Sbjct 1383 CTGGTCCACGCCCTGACCAGTGTAGTCGGCGTTCATGTCCGTGTACTTGGCCCCAAAATG 1442 Query 21299 TCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC-----CTCGCG---GCGGTCCCCG 21350 | ||||||||| ||||| ||||| || || ||||| | |||| || |||| || Sbjct 1443 ACGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCCAACTTCCCGCGACTGCAGTCCTCG 1502 Query 21351 AAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGG 21410 | ||| ||| | | | |||||||| | ||||||| || | | | | Sbjct 1503 A----CTG----TCCAGATACTCTCGGGACCCATTGCCGTCCCAGATGTGGATGTCCTTC 1554 Query 21411 CGCGACAG-TTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGAC 21469 || ||| | | | | || ||| || |||||||||||||||| ||||||| | || Sbjct 1555 TGCTGCAGCGTGTGCGCACTC-GTGTCACCACTGATAAACCACAGCAGCTCCTCCGCCAC 1613 Query 21470 GCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAAC---TCGTCCCTGAG 21520 ||| | ||| || || | ||||| || | || || ||| | |||||| || Sbjct 1614 GCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAACGGGAACACATTGTCCCTCAG 1667 >seq86700 Length=3918 Score = 199 bits (220), Expect = 3e-46 Identities = 296/419 (71%), Gaps = 18/419 (4%) Strand=Plus/Minus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 || || || ||||||||| || |||||||| ||||| | ||| ||||| || || Sbjct 2168 AGCGGCTCGACGTGGTTGAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 2109 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 || |||| || | || || || ||||| ||| || | |||||||||||||| || Sbjct 2108 GGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAGCTGGCGATATTG 2049 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 ||||| || || || ||||||||||| || | |||||||| ||||||||||| ||| || Sbjct 2048 AACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCTCCG 1989 Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164 |||||||| ||||| || || | ||| || || ||||| |||||| ||| ||| Sbjct 1988 TCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATCC 1929 Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGATC-GTGGG--------GCCGCCTGTTA 21215 || || |||||||| ||| ||||| || || || || || || || ||| | Sbjct 1928 GCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATTCGTGCGCAGCTTGTGA 1869 Query 21216 ATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCC 21275 || ||| || ||||||||||| ||||| || ||||| ||||| Sbjct 1868 AT------AACCTCG---GTGAGCTGGTCCACGCCCTGGCCAGTGTAGTCGGCGTGCATG 1818 Query 21276 CCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 || |||||| |||||||| || | ||||||||| ||||| ||||| || || ||||| Sbjct 1817 TCCGTGTACTTGGCCCCAAAGTGACGCCACTGGAAGCCGTAGACCGGTCCAAGGTCGCC 1759 >seq57059 Length=1150 Score = 194 bits (214), Expect = 1e-44 Identities = 317/456 (70%), Gaps = 18/456 (4%) Strand=Plus/Plus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 ||||||||| ||||| || | ||||| | | || || || ||||||||| || Sbjct 663 CGGAAACGGGCGCGGCGTTCGAGTAAGCTGCTTCTGGAGCGGCTCGACGTGGTTGAGATA 722 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 |||||||| || || | ||| ||||| || || || |||| || | || || || Sbjct 723 CACGTGGGCATCGCCAATAACGTGGACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGC 782 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 | ||| ||| || | |||||||||||||| || ||||| || || || |||||||| Sbjct 783 TACCAGTCGCGTAAGCAATGCGTAGCTGGCGATATTGAACGGCACGCCAAGTCCCATGTC 842 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAA 21127 || || | |||||||| ||||||||||| ||| || |||||||| || ||||| || Sbjct 843 AGCCGAGCGCTGGTACATCTGGCAGGACAACTCTCCGTCGGCCACGTAGAATTGACAGAA 902 Query 21128 AACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAAC 21187 | ||| || || ||||| |||||| ||| ||||| || |||||||| ||| || Sbjct 903 CATGTGGCACGGCGGGAGCGCCATCTCATTGAGATCCGCCGGATTCCACGCCGACAGCAC 962 Query 21188 GATGCGCCGATCG--------TG-GGGCCGCCTGTTAATTAGATCCACCACGTAACGCAG 21238 || || || ||| || | || || ||| ||| | || | || || Sbjct 963 AATCCGACGGTCGGTCGGATTTGTGCGCAGCTTGTCAAT---AACCTCAGCG------AG 1013 Query 21239 CTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATG 21298 ||||||||| |||||||| ||||| || | || |||||| ||||||||||| Sbjct 1014 CTGGTCCACGCCCTGACCAGTGTAGTCTGCATGCATGTCCGTGTACTTGGCCCCAAAATG 1073 Query 21299 TCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 | ||||||||| ||||| ||||| || || ||||| Sbjct 1074 ACGCCACTGGAAGCCGTAGACCGGTCCAAGGTCGCC 1109 >seq72444 Length=2747 Score = 188 bits (208), Expect = 6e-43 Identities = 279/395 (71%), Gaps = 18/395 (5%) Strand=Plus/Plus Query 20949 ACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCG 21008 |||||||| || || | ||| ||||| || || || |||| || | || || || Sbjct 435 ACGTGGGCATCGCCAATAACGTGGACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCT 494 Query 21009 ATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCG 21068 | ||| ||| || | |||||||||||||| || ||||| || || || ||||||||| Sbjct 495 ACCAGTCGCGTAAGCAACGCGTAGCTGGCGATATTGAACGGCACGCCAAGTCCCATGTCG 554 Query 21069 GCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAA 21128 || || | |||||||| ||||||||||| ||| || |||||||| ||||| || || Sbjct 555 GCCGAACGCTGGTACATCTGGCAGGACAACTCGCCGTCGGCCACGTAGAACTGGCAGAAC 614 Query 21129 ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACG 21188 | ||| || || ||||| |||||| ||| ||||| || |||||||| ||| ||| Sbjct 615 ATGTGGCACGGCGGGAGCGCCATCTCATTGAGATCCGCCGGATTCCACGCCGACAGCACG 674 Query 21189 ATGCGCCGATCG--------TG-GGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGC 21239 || || || ||| || | || || ||| ||| | || | || ||| Sbjct 675 ATCCGACGGTCGGTCGGATTTGTGCGCAGCTTGTCAAT---AACCTCAGCG------AGC 725 Query 21240 TGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGT 21299 |||||||| |||||||| ||||| ||||| || |||||| ||||||||||| Sbjct 726 TGGTCCACGCCCTGACCAGTGTAGTCGGCGTGCATGTCCGTGTACTTGGCCCCAAAATGA 785 Query 21300 CTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 | ||||||||| ||||| || || || || ||||| Sbjct 786 CGCCACTGGAAGCCGTAGACTGGTCCAAGGTCGCC 820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427158333431520