Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq96931 161 9e-35 seq16837 161 9e-35 seq68828 159 3e-34 >seq96931 Length=2169 Score = 161 bits (178), Expect = 9e-35 Identities = 198/268 (74%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACG-CCACCT 5558 |||||||||| ||||| ||||| ||||| | |||| || || | | || |||||| Sbjct 984 CACGCCCGTGCTGCCGAAACCGCCGGCGCCACGCGCCGTGTCCTCGAT-CTCGTCCACCT 926 Query 5559 CTTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCT 5618 | | | || ||| || | |||| ||| |||||||| | ||||| || || Sbjct 925 CCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTCCCCGCGCT 866 Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 | || ||| || | | || ||||||||| | ||||||||||||||||||||||| Sbjct 865 TGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGT 806 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 ||||||| |||||||| |||||| ||||||||| | ||||| ||| || |||||||| | Sbjct 805 CGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCCGGAGCGCG 746 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGG 5766 | |||||||| ||||||| || ||||| Sbjct 745 GCGCCACGCGCGCGTAGCAGCCGTCGGG 718 >seq16837 Length=2220 Score = 161 bits (178), Expect = 9e-35 Identities = 198/268 (74%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACG-CCACCT 5558 |||||||||| ||||| ||||| ||||| | |||| || || | | || |||||| Sbjct 1505 CACGCCCGTGCTGCCGAAACCGCCGGCGCCACGCGCCGTGTCCTCGAT-CTCGTCCACCT 1563 Query 5559 CTTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCT 5618 | | | || ||| || | |||| ||| |||||||| | ||||| || || Sbjct 1564 CCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTCCCCGCGCT 1623 Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 | || ||| || | | || ||||||||| | ||||||||||||||||||||||| Sbjct 1624 TGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGT 1683 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 ||||||| |||||||| |||||| ||||||||| | ||||| ||| || |||||||| | Sbjct 1684 CGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCCGGAGCGCG 1743 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGG 5766 | |||||||| ||||||| || ||||| Sbjct 1744 GCGCCACGCGCGCGTAGCAGCCGTCGGG 1771 >seq68828 Length=4007 Score = 159 bits (176), Expect = 3e-34 Identities = 198/269 (74%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTC 5559 |||||||||| ||||| ||||| ||||| | |||| || || | | ||||||| Sbjct 1070 CACGCCCGTGCTGCCGAAGCCGCCAGCGCCACGCGCCGTGTCCTCGATCTCCTCCACCTC 1011 Query 5560 TTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | | || ||| || | |||| ||| |||||||| | ||||| || ||| Sbjct 1010 CTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTCCCCGCGCTT 951 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || ||| || | | ||||| ||||||||| | |||||||||||||||||||||| Sbjct 950 AACTGGGAAGTCCTCG--GCCGAGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAG 893 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 |||||||| |||||||| |||||| ||||||||| | ||||| ||| || || ||||| Sbjct 892 TCGGCGTCAATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCCCGAGCGC 833 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGG 5766 || |||||||| ||||||| || ||||| Sbjct 832 GGCGCCACGCGCGCGTAGCAGCCGTCGGG 804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429433443645488