Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq76103 147 1e-30 seq86700 134 9e-27 seq57059 125 5e-24 seq72444 114 9e-21 seq16837 93.3 3e-14 seq96931 84.2 1e-11 seq68828 84.2 1e-11 >seq76103 Length=1730 Score = 147 bits (162), Expect = 1e-30 Identities = 372/561 (66%), Gaps = 15/561 (3%) Strand=Plus/Plus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| ||||| || ||||| | ||| || ||||| || || || | | |||| Sbjct 1057 AGCTGCTTCTGGAGCGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACGTGG 1116 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTA-CGTGAGGAGAAAGTA 25531 |||||||| || || | ||||| | || | || | || || |||||| | ||| Sbjct 1117 ACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCTA-CAAGTCGCGTGAGCAACGCGTA 1175 Query 25532 GCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGAC 25591 |||||| || ||||| || || || | |||||||| || || | |||||| | ||| | Sbjct 1176 GCTGGCAATATTAAACGGCACGCCAAGTCCCATGTCGGCC-GAGCGCTGGTACATCTGGC 1234 Query 25592 ACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTA 25651 |||| | ||| ||||| |||||| ||||| || | ||| |||||| || || || | Sbjct 1235 ACGACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGTGCCA 1294 Query 25652 TAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTT-G 25710 | | || || ||||| || ||| | ||| | | ||| || || | Sbjct 1295 TCTTATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGCTCGGATTCG 1354 Query 25711 TCCC-----TGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGT 25765 | | || || || ||| | ||||| ||||| ||| || | ||||| Sbjct 1355 TGCGCAGCTTGTGAATGACCTCGGCG------AGCTGGTCCACGCCCTGACCAGTGTAGT 1408 Query 25766 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTC 25825 | || ||||||||||||||| || || |||| | ||||||||| ||||| ||||||| Sbjct 1409 CGGCGTTCATGTCCGTGTACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGACCGGTC 1468 Query 25826 CTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCAT 25885 | ||||| ||| |||||| || | || | | |||| | | |||| ||| |||| Sbjct 1469 CGAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCTCGGGACCCAT 1528 Query 25886 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 25945 || |||||||||| | | |||||| ||| | | | ||| || |||| Sbjct 1529 TGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCACCACTGA 1588 Query 25946 CGAACCACAGCAGCTCCGCCG 25966 ||||||||||||||| ||| Sbjct 1589 TAAACCACAGCAGCTCCTCCG 1609 >seq86700 Length=3918 Score = 134 bits (148), Expect = 9e-27 Identities = 371/564 (66%), Gaps = 21/564 (4%) Strand=Plus/Minus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| ||||| || ||||| | || || ||||| || || || | | |||| Sbjct 2180 AGCTGCTTCTGGAGCGGCTCGACGTGGTTGAGATACACGTGGGCATCACCAATAACGTGG 2121 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 |||||||| || || | || || | || | || |||| ||| || | |||| Sbjct 2120 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 2061 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 |||||||| || || || || || | ||||||| | |||| | |||||| | ||| || Sbjct 2060 CTGGCGATATTGAACGGCACGCCAAGTCCCATGT-CGGCCGAGCGCTGGTACATCTGGCA 2002 Query 25593 CGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 || | |||| ||||| |||||| ||||| || | ||| |||||| || || || || Sbjct 2001 GGACAACTCTCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT 1942 Query 25653 AAGGCCCA---AG-TCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTC-TTCTGGG 25707 | || || || || ||||| || ||| | ||| | | ||| || | Sbjct 1941 ----CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGAT 1886 Query 25708 TTGT-----CCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 25762 | || | || || | || ||||| ||||| ||||| ||| || | || Sbjct 1885 TCGTGCGCAGCTTGTGAATAACCTCGGTG------AGCTGGTCCACGCCCTGGCCAGTGT 1832 Query 25763 AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCG 25822 |||| || |||||||||||||| || || || | | ||||||||| ||||| |||| Sbjct 1831 AGTCGGCGTGCATGTCCGTGTACTTGGCCCCAAAGTGACGCCACTGGAAGCCGTAGACCG 1772 Query 25823 GTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAAC 25882 |||| ||||| ||| |||||| || | || | | |||| | | || | || | Sbjct 1771 GTCCAAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGACC 1712 Query 25883 CATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTC 25942 ||||| |||||||||| | | |||||| ||| | | | ||| || | Sbjct 1711 CATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCTCCAC 1652 Query 25943 TGACGAACCACAGCAGCTCCGCCG 25966 ||| |||||||||||||||| ||| Sbjct 1651 TGATGAACCACAGCAGCTCCTCCG 1628 >seq57059 Length=1150 Score = 125 bits (138), Expect = 5e-24 Identities = 295/441 (67%), Gaps = 21/441 (5%) Strand=Plus/Plus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| ||||| || ||||| | || || ||||| || || || | | |||| Sbjct 688 AGCTGCTTCTGGAGCGGCTCGACGTGGTTGAGATACACGTGGGCATCGCCAATAACGTGG 747 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 |||||||| || || | ||||| | || | || | || ||| || | |||| Sbjct 748 ACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCTACCAGTCGCGTAAGCAATGCGTAG 807 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 |||||||| || || || || || | ||||||| | |||| | |||||| | ||| || Sbjct 808 CTGGCGATATTGAACGGCACGCCAAGTCCCATGT-CAGCCGAGCGCTGGTACATCTGGCA 866 Query 25593 CGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 || | |||| ||||| |||||| || ||||| | ||| |||||| || || || || Sbjct 867 GGACAACTCTCCGTCGGCCACGTAGAATTGACAGAACATGTGGCACGGCGGGAGCGCCAT 926 Query 25653 AAGGCCCA---AG-TCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTC-TTCTGGG 25707 | || || || || ||||| || ||| | || | | ||| || | Sbjct 927 ----CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACAATCCGACGGTCGGTCGGAT 982 Query 25708 TTGT-----CCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 25762 |||| | || || | || | | | ||||| ||||| ||| || | || Sbjct 983 TTGTGCGCAGCTTGTCAATAACCTCAGCG------AGCTGGTCCACGCCCTGACCAGTGT 1036 Query 25763 AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCG 25822 ||||||| |||||||||||||| || || |||| | ||||||||| ||||| |||| Sbjct 1037 AGTCTGCATGCATGTCCGTGTACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGACCG 1096 Query 25823 GTCCTAGGTCTCCATCTTCCC 25843 |||| ||||| ||| |||||| Sbjct 1097 GTCCAAGGTCGCCAACTTCCC 1117 >seq72444 Length=2747 Score = 114 bits (126), Expect = 9e-21 Identities = 345/528 (65%), Gaps = 21/528 (4%) Strand=Plus/Plus Query 25449 ACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCC 25508 ||||| || || || | | |||||||||||| || || | ||||| | || | || Sbjct 435 ACGTGGGCATCGCCAATAACGTGGACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCT 494 Query 25509 ATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCC 25568 | || ||| || | |||||||||||| || || || || || | |||||||| Sbjct 495 ACCAGTCGCGTAAGCAACGCGTAGCTGGCGATATTGAACGGCACGCCAAGTCCCATGTCG 554 Query 25569 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACAT 25628 || || | |||||| | ||| || || | ||| ||||| |||||| ||||| || | Sbjct 555 GCC-GAACGCTGGTACATCTGGCAGGACAACTCGCCGTCGGCCACGTAGAACTGGCAGAA 613 Query 25629 GGTGTAGCACGGAGGAAGAGCTATAAGGCCCA---AG-TCTTTAGGGTTCCAGGCGCACA 25684 ||| |||||| || || || || | || || || || ||||| || ||| Sbjct 614 CATGTGGCACGGCGGGAGCGCCAT----CTCATTGAGATCCGCCGGATTCCACGCCGACA 669 Query 25685 CGATGATGCACCTGTCT-TCTGGGTTGTCCC-----TGATAAGATCCGCGGTGTTTTGCA 25738 | ||| | | ||| || | |||| | || || | || | | | | Sbjct 670 GCACGATCCGACGGTCGGTCGGATTTGTGCGCAGCTTGTCAATAACCTCAGCG------A 723 Query 25739 GCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAAT 25798 |||| ||||| ||| || | |||||| || |||||||||||||| || || |||| Sbjct 724 GCTGGTCCACGCCCTGACCAGTGTAGTCGGCGTGCATGTCCGTGTACTTGGCCCCAAAAT 783 Query 25799 ACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCC 25858 | ||||||||| ||||| || ||||| ||||| ||| |||||| || | || | Sbjct 784 GACGCCACTGGAAGCCGTAGACTGGTCCAAGGTCGCCAACTTCCCGCGACTGCAGTCCTC 843 Query 25859 TCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGA 25918 | |||| | | || | || |||||| |||||||||| | | ||||||| | Sbjct 844 GACTGTCCAGATACTCCCGCGATCCATTGCCGTCCCAGATGTGGATATCCTTCTCCTGCA 903 Query 25919 GCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCCG 25966 || | | | ||| || |||| |||||||||||||||| ||| Sbjct 904 GCGTGTGCGCACTCGTGTCGCCACTGATGAACCACAGCAGCTCCTCCG 951 >seq16837 Length=2220 Score = 93.3 bits (102), Expect = 3e-14 Identities = 204/306 (67%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 40691 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 40750 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 1556 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 1615 Query 40751 GCCCCTCTCGACCCGAAAAGGGTCGCACCCAAAGTTAAACAATATGACGCCGAGGTTGCC 40810 || | || ||| | || ||| | | ||| |||| || ||||| | |||||| Sbjct 1616 CCCGCGCTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 1675 Query 40811 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTCCAGGGCCAGGCC 40870 | |||||||| ||| | ||| ||||| || ||| || || || | || || || || Sbjct 1676 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCC 1735 Query 40871 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTTACGGCCAGGTCCGTCTT 40930 ||| | || ||||| | ||||| ||| ||| | | | ||||||||||||| Sbjct 1736 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 1795 Query 40931 TACCAGGGCCCTGCCAAAGGAGGGGACCACGACCGGGTAAGCGGCCGCTAGGTCGTAACC 40990 || ||| || |||| | ||||| |||| | |||||| |||| ||||| ||| Sbjct 1796 GACGAGGCCCTTGCCGCCTGCGGGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACC 1855 Query 40991 CGCGGC 40996 |||||| Sbjct 1856 CGCGGC 1861 >seq96931 Length=2169 Score = 84.2 bits (92), Expect = 1e-11 Identities = 202/306 (66%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 40691 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 40750 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 933 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 874 Query 40751 GCCCCTCTCGACCCGAAAAGGGTCGCACCCAAAGTTAAACAATATGACGCCGAGGTTGCC 40810 || | || ||| | || ||| | | ||| |||| || ||||| | |||||| Sbjct 873 CCCGCGCTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 814 Query 40811 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTCCAGGGCCAGGCC 40870 | |||||||| ||| | ||| ||||| || ||| || || || | || || || || Sbjct 813 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCC 754 Query 40871 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTTACGGCCAGGTCCGTCTT 40930 ||| | || ||||| | ||||| ||| ||| | | | ||||||||||||| Sbjct 753 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 694 Query 40931 TACCAGGGCCCTGCCAAAGGAGGGGACCACGACCGGGTAAGCGGCCGCTAGGTCGTAACC 40990 || ||| || |||| | |||| |||| | |||||| |||| ||||| ||| Sbjct 693 GACGAGGCCCTTGCCGCCCGCTGGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACC 634 Query 40991 CGCGGC 40996 ||| || Sbjct 633 CGCAGC 628 >seq68828 Length=4007 Score = 84.2 bits (92), Expect = 1e-11 Identities = 151/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 40784 GTTAAACAATATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 40843 ||| |||| || ||||| | |||||| | |||||||| ||| | ||| ||||| || Sbjct 926 GTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCAATCACGCCGGCGCCCGT 867 Query 40844 GTCTATAAAATTTTCCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 40903 ||| || || || | || || || || || | || ||||| | ||||| ||| Sbjct 866 GTCGATGAACTTCTTGAGCGCGAGTCCCGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTC 807 Query 40904 GGGCATCTTTACGGCCAGGTCCGTCTTTACCAGGGCCCTGCCAAAGGAGGGGACCACGAC 40963 ||| | | | ||||||||||||| || ||| || |||| | ||||| |||| | Sbjct 806 GGGTACGGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCGGGGATCACGGC 747 Query 40964 CGGGTAAGCGGCCGCTAGGTCGTAACCCGCGGCTCCAGCG 41003 |||||| |||| ||||| |||||||| |||||| Sbjct 746 GTCGTAAGCAGCCGACAGGTCCAGACCCGCGG--CCAGCG 709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339646474681602