Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_006151.1 Length=143461 Score E Sequences producing significant alignments: (Bits) Value seq92206 96.9 3e-15 >seq92206 Length=3684 Score = 96.9 bits (106), Expect = 3e-15 Identities = 261/390 (67%), Gaps = 16/390 (4%) Strand=Plus/Plus Query 94088 CCCCAGAGCATGAACACCAGCTTGGGGCGGGTCTCGCAGAGCCGCTGGAC--GACGGCGC 94145 |||||||||| |||||| | |||| || || || | ||||| ||||||| Sbjct 2077 CCCCAGAGCAGGAACACGACGTTGGAAGCTTCCTTGCTGA--CTCTGGAGATGACGGCGT 2134 Query 94146 GCACGAGCCGCGCCCAGCCGAGCGGGGCGTGGGAGCCGGGGACCCCGCGCCGCACGGTCA 94205 || | || |||||||| || ||| ||| || | || || || || || | Sbjct 2135 CTGTGAACTGCTCCCAGCCGCGCTTCTTGTGCGAGTTGGCCTCTCCTCGACGGACTGTAA 2194 Query 94206 GCGTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGGGCGG 94265 || ||||| || |||||||| || | || |||| || ||||||||||| || Sbjct 2195 GCACAGTGTTGAGAAGCAGCACGCCCTGCCGACTCCAGCAAGACAAGCAGCCGTGGGTGG 2254 Query 94266 GCGCGGGCAGCGTCGGGTACGTCGCCCG-GACCGCCGCGAAGATGTTGGCCAGGCTCGGG 94324 | ||| ||| | | |||||| | | || || ||||||||| || || || Sbjct 2255 G-GCGCGCAATGCCC---ACGTCGTTCATGGCCTCCTTGAAGATGTTCTTGAGACTGGGC 2310 Query 94325 GGGATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCCGTGGGCCTGGCCCGGCCCGTGG 94384 || ||| || ||| | || || |||| ||| ||||| ||||| |||||||||| Sbjct 2311 GGCGGCGGGACTCCGTGGCGCACCGAGAAGCTCAGTCCGTGAGCCTGCTGCGGCCCGTGG 2370 Query 94385 TACGGGTCCTGGCCGATGATGACCACCTTGACGTCCTCG--GGCGCCGTGAGGC-GCGTC 94441 |||||||| ||||| || || |||||||||| ||| | ||||| || || ||| | Sbjct 2371 TACGGGTCTTGGCCTATAATCACCACCTTGAGGTCGGAGAAGGCGCAGTCTCGCAGCGCC 2430 Query 94442 CAGGCGAACACGTCCTCGCGC-GCGGGCAG 94470 |||||||||||| || || ||||| || Sbjct 2431 ---GCGAACACGTCCGCGGGCGGCGGGTAG 2457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458267533617840