Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq53706 145 1e-30 seq51063 131 3e-26 seq98802 127 3e-25 seq92516 127 3e-25 >seq53706 Length=1549 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| | ||||| || |||||||| || ||||||||||| || || Sbjct 1314 CGCCAAGCGTCACCGCAAAGTCCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1255 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || || |||||| |||| || | |||| || |||| Sbjct 1254 CCGTCGTCTCGCACGTCGTGGCGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 1195 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || || Sbjct 1194 CCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCCGTCACCTACACGGA 1135 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || ||||| ||||||| ||||||| || | || || || || Sbjct 1134 GCACGCTCGCCGCAAAACCGTCACTGCCATGGACGTCGTCTACGCTCTCAAGCGCCAGGG 1075 Query 16672 CCG 16674 || Sbjct 1074 ACG 1072 >seq51063 Length=1207 Score = 131 bits (144), Expect = 3e-26 Identities = 177/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 862 CGCCAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCGGCCA 804 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||||||||| || || ||||| | || || | |||| || |||| Sbjct 803 TCCGCCGTCTCGCTCGTCGTGGCGGTGTGAAGCGCATTTCCGGCCTCATCTACGAGGAGA 744 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| | ||| ||||||| ||| ||| |||| || | || || || | Sbjct 743 CGCGTGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACTCGGTCACGTACACGG 684 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || ||||| || ||||||| |||| || || | || || || | Sbjct 683 AGCACGCTCGTCGCAAAACTGTGACGGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGG 624 Query 16671 GCCG 16674 | || Sbjct 623 GACG 620 >seq98802 Length=3779 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 1781 CGCCAAGCGTCACCGCAAGGTC-CTTCGTGACAACATCCAGGGCATCACCAAGCCGGCCA 1839 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||||||||| || || ||||| |||| || | |||| || |||| Sbjct 1840 TCCGCCGTCTCGCTCGTCGTGGCGGTGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGA 1899 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| ||| ||| |||| || | || || || | Sbjct 1900 CGCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACTCGGTCACGTACACGG 1959 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || ||||| || ||||||| |||| || || | || || || | Sbjct 1960 AGCACGCTCGTCGCAAAACTGTGACGGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGG 2019 Query 16671 GCCG 16674 | || Sbjct 2020 GACG 2023 >seq92516 Length=4758 Score = 127 bits (140), Expect = 3e-25 Identities = 175/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 1986 CGCCAAGCGTCACCGCAAGGTC-CTTCGYGACAACATCCAGGGCATCACCAAGCCSGCCA 2044 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||||||||| || || ||||| | || || | |||| || |||| Sbjct 2045 TCCGCCGTCTCGCTCGTCGTGGCGGTGTGAAGCGCATYTCCGGCCTCATCTACGAGGAGA 2104 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| ||| ||| |||| || | || || || | Sbjct 2105 CGCGYGGYGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACTCGGTCACGTACACGG 2164 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || ||||| || ||||||| |||| || || | || || || | Sbjct 2165 AGCACGCTCGTCGCAAAACTGTGACGGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGG 2224 Query 16671 GCCG 16674 | || Sbjct 2225 GACG 2228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78966878392482