Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq110124 214 5e-50 seq76529 149 2e-30 seq64259 123 6e-23 >seq110124 Length=2655 Score = 214 bits (236), Expect = 5e-50 Identities = 510/758 (67%), Gaps = 15/758 (2%) Strand=Plus/Plus Query 364061 CTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGC 364120 |||||| |||||||| || |||||||| || || ||||| || ||| ||| ||| Sbjct 15 CTCTAT--GAAAAGTACGAGACGGAGGGACGCGCCCGCAAGACGATCAACGCCCAGCAGC 72 Query 364121 TATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAG 364180 | ||||||||||| |||| | ||||| ||||| ||| |||| |||||||||||| | Sbjct 73 TGTGGTTTGCCATATTGGACGCCCAGATCGAGACGGGAGTGCCCTTTATGTTGTACAAGG 132 Query 364181 ATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTAT 364240 | || |||||||||||| ||||||||| |||| || || || | |||||| ||| Sbjct 133 ACGCGGCCAACCGCAAGTCGAACCAGCAGAACCTCGGCACGATCCGCTCCAGCAACTTAT 192 Query 364241 GTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGA 364300 | ||| | || || ||||| | || |||||| || || || ||| | ||||| Sbjct 193 GCTGTGAGGTCATGGAGTACACGTCGCCGGACGAGGTGGCTGTGTGCAACTTGGCGTCTG 252 Query 364301 TCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAA 364360 | ||||| || ||| || | || || ||| || ||||| | | ||||| || | Sbjct 253 TGGCGCTGCCTAAGTTCGTGGAGGAAGGAGTTTTCAACTACCAGAAGTTGTATGAGGTGA 312 Query 364361 CCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTG 364420 || | | || | || || ||||||| |||||| || || || || || | Sbjct 313 CCAAGGTGGTCACCCGTAACCTGAACAAGGTCATCGACGTCAACTACTA-CCCCGTCATC 371 Query 364421 AAGCCGAGC-GTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCT 364479 || || || || || |||||||| ||||| |||||| |||| || ||||||||||| Sbjct 372 GAGGCGCGCAAGTCCAACATGCGTCACCGCCCCATTGGTATTGGCGTCCAGGGCCTCGCG 431 Query 364480 GACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTG-ACGCTCGTGTTCTAAATAA 364538 |||| ||||| | | || || || || || | | || || | || || || Sbjct 432 GACGCGTTTATCCTCATGAACTACGCGTTCGA-GAGCGAGAAGGCCCGGGAGCTCAACAA 490 Query 364539 GGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCG-TGTGATTTGGCAAAAA 364597 | | ||||| || || || || || ||||| ||| | ||| || ||| ||| | Sbjct 491 GAACATCTTCGAGACCATCTACTTCGCCGCCATGGAGACGTCGATGGAGATTGCCAAGGA 550 Query 364598 CCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTG 364657 | || |||| || | |||| || ||| | |||| | |||||||| | Sbjct 551 AC-TCGGCCCGTACGAGACGTTCCAGGGCTCGCCTGCTAGCAAGGGCATCTTCCAGTTCG 609 Query 364658 ATCTATGGAATGTCACGCCATCTGTCCG----ATGGAACTGGGATACGCTACGTTCCAAC 364713 | | ||| ||||| || || ||| | |||||||||| |||||| || Sbjct 610 ACATGTGGGGCGTCACCCCGTC-GTCGGGTATGTGGAACTGGGCTACGCTCAAGGAGGAC 668 Query 364714 GTTAAGAAGCATGGTACT-CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTAC 364772 || | ||||| || ||| |||||||| || | || |||||||| |||||||| || Sbjct 669 GTGATCAAGCACGG-ACTGCGCAACTCGCTGCTGGTGGCCCCCATGCCGACGGCTTCGAC 727 Query 364773 TGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGT 364810 || ||||||||||| |||||||||| | |||| |||| Sbjct 728 GGCCCAGATCCTCGGCAACAACGAGTCCATCGAGCCGT 765 >seq76529 Length=2445 Score = 149 bits (164), Expect = 2e-30 Identities = 458/700 (65%), Gaps = 19/700 (3%) Strand=Plus/Minus Query 364110 CGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATAT 364169 ||| ||| |||| ||||| ||||| |||| | ||||| ||||| ||| |||| ||| Sbjct 1799 CGCCCAGCAGCTGTGGTTCGCCATATTGGACGCCCAGATCGAGACGGGAGTGCCCTTTAT 1740 Query 364170 GTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCA 364229 ||||||||| || | |||||||||||| ||||||||| |||| || || || | Sbjct 1739 GTTGTACAAGGACGCTGCCAACCGCAAGTCGAACCAGCAGAACCTCGGCACGATCCGCTC 1680 Query 364230 GAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289 |||||| |||| ||| | || || ||||| | || |||||| || || || || Sbjct 1679 CAGCAACTTATGCTGTGAGGTGATGGAGTACACGTCGCCGGACGAGGTGGCTGTGTGCAA 1620 Query 364290 CCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTGACCACCAGCATCT 364349 | | ||||| | ||||| || ||| || | || || ||| || ||||| | | Sbjct 1619 CTTAGCGTCTGTGGCGCTGCCCAAGTTCGTGGAGGAAGGAGTTTTCAACTACCAGAAGTT 1560 Query 364350 TTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTA 364409 || || || ||| | | || |||| | ||||||| |||||| || || || Sbjct 1559 GTACGAAGTGACCAAGGTGGTCACCCGCAACTTAAACAAGGTCATCGACGTCAACTACTA 1500 Query 364410 TCCAATTCCTGA---AGCCGAGC-GTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTG 364465 || | ||| || || || || || |||||||| || || || ||| |||| | Sbjct 1499 CCC----CGTGATCGAGGCGCGCAAGTCCAACATGCGTCACCGTCCCATCGGTATTGGCG 1444 Query 364466 TACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTG-ACGCT 364524 | ||||||||||| |||| ||||| | | || || || || || | | ||| Sbjct 1443 TTCAGGGCCTCGCGGACGCGTTTATCCTCATGAACTACGCGTTCGA-GAGCGAGAAGGCT 1385 Query 364525 CGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGT 364584 || | || || ||| | |||||||| || || || ||||| || ||| | ||| Sbjct 1384 CGGGAGCTCAACAAGAACATCTTTGAGACCATCTACTTTGCTGCCATGGAGACGTCGATG 1325 Query 364585 GATTTGGCAAA--AACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGG 364642 || | || || ||| || |||| || | |||| || ||| ||| Sbjct 1324 GAGATCGCCAAGGAAC--TCGGCCCGTACGAGACGTTCCAGGGCTCGCCTGCCAGCAAGG 1267 Query 364643 GAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTC----CGATGGAACTGGGAT 364698 | | |||||||| || | ||| ||||| || || ||| | |||||||||| | Sbjct 1266 GCATCTTCCAGTTCGACATGTGGGGCGTCACCCCGTC-GTCGGGTCTGTGGAACTGGGCT 1208 Query 364699 ACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATG 364758 || || |||| ||||| || |||||||| || | || |||||| Sbjct 1207 ACCCTCAAACAGGACGTGGTCAAGCACGGGCTGCGCAACTCGCTGCTGGTGGCCCCCATG 1148 Query 364759 CCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGT 364798 || |||||||| || || ||||||||||| |||||||||| Sbjct 1147 CCGACGGCTTCAACGGCCCAGATCCTCGGCAACAACGAGT 1108 >seq64259 Length=514 Score = 123 bits (136), Expect = 6e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 364042 TGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG 364101 ||||| ||||| | | || || || |||||||| || |||||||| || || ||| Sbjct 306 TGGGGCGACGAATTCGAGGCCCTCTATGAAAAGTACGAGACGGAGGGACGCGCCCGCAAG 365 Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161 || || ||| ||| |||| ||||| ||||| |||| | ||||| ||||| ||| Sbjct 366 ACGATCAACGCCCAGCAGCTGTGGTTNGCCATATTGGACGCCCAGATCGAGACGGGAGTG 425 Query 364162 CCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACA 364221 |||| |||||||||||| || || |||||||||||| ||||||||| |||| || || Sbjct 426 CCCTTTATGTTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACCTCGGCACG 485 Query 364222 ATTCAGCAGAGCAACCTATG 364241 || | |||||| |||| Sbjct 486 ATCCGCTCCAGCAACTTATG 505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301375176846668