Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq110124 161 9e-35 seq96335 152 5e-32 seq102828 150 2e-31 seq88141 136 4e-27 seq76529 118 1e-21 seq52299 84.2 2e-11 >seq110124 Length=2655 Score = 161 bits (178), Expect = 9e-35 Identities = 485/737 (66%), Gaps = 29/737 (4%) Strand=Plus/Minus Query 145070 AACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCG 145129 |||||||| |||| ||| || || |||| ||| |||||| | || || | |||||| Sbjct 808 AACTCGCCAGCCAGCACTCGGCGGTTGTACATGTTGGACGTGTACGGCTCGATGGACTCG 749 Query 145130 TTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTG 145189 || ||||| ||||| || || |||| || || |||||| ||||||| | || ||| Sbjct 748 TTGTTGCCGAGGATCTGGGCCGTCGAAGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTG 689 Query 145190 CGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCATAG---CGAAGTC 145246 ||||| |||||||| | | ||| ||||| |||||| |||| | ||| | ||| | | Sbjct 688 CGCAGTCCGTGCTTGATCACGTCCTCCTTGAGCGTAGCCCAGTTCCACATACCCGACGAC 629 Query 145247 GGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAG 145306 || | ||| ||||||||||| |||| || ||||||| ||| || || ||| || || Sbjct 628 GGGGTGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTAGCAGGCGAGCCCTGGAAC 569 Query 145307 GAACTGTAACTGCCCCAAGTT--TTGGCGAGCTCGCAAC-TCGCCTCCAGAGCGCCGAAA 145363 | ||| | || |||| ||||| | ||| || | || ||||| ||| |||| Sbjct 568 GTCTCGTA--CGGGCCGAGTTCCTTGGCAATCTC-CATCGACGTCTCCATGGCGGCGAAG 512 Query 145364 TAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATG 145423 || || |||||| || | | |||||||| | || | ||||||||| ||| | Sbjct 511 TAGATGGTCTCGAAGATGTTCTTGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACGCGTAG 452 Query 145424 CGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTC 145483 || || | ||| || || ||||| ||||| | || | || ||||| || || | Sbjct 451 TTCATGAGGATAAACGCGTCCGCGAGGCCCTGGACGCCAATACCAATGGGGCGGTGACGC 392 Query 145484 ATGTTGCTCATCCTCGCCGACTCGAT---AGGATA-TCGATTACGGTCGATAATTTTATT 145539 |||||| | | | ||| |||||| || || | | | || |||||| | || || Sbjct 391 ATGTTGGACTTGCGCGC---CTCGATGACGGGGTAGTAGTTGAC-GTCGATGACCTTGTT 336 Query 145540 CAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTC 145599 || ||| || || ||||| || | | |||||| | ||| || | || Sbjct 335 CAGGTTACGGGTGACCACCTTGGTCACCTCATACAACTTCTGGTAGTTGAAAACTCCTTC 276 Query 145600 GTCAACGACC--ACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCC 145657 || |||| | | |||| || | |||||||| || || || ||| ||| Sbjct 275 CTCCACGAACTTAGGCAGC--------GCCACAGACGCCAAGTTGCACACAGCCACCTCG 224 Query 145658 T-CGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAG 145716 | ||||| || |||| | | || ||| ||| || ||||| | ||| || || || Sbjct 223 TCCGGCGACG-TGTACTCCATGACCTCACAGCATAAGTTGCTGGAGCGGATCGTGCCGAG 165 Query 145717 ATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGT 145776 || ||||| || || | |||| |||||||||||| | ||| | || | || || Sbjct 164 GTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAACATAAAGGGCACTCCCGT 105 Query 145777 CTCCACCTGCGTCTCCA 145793 ||| | ||| | |||| Sbjct 104 CTCGATCTGGGCGTCCA 88 >seq96335 Length=3561 Score = 152 bits (168), Expect = 5e-32 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| ||||||||| | || | ||||||||||| || |||||||| |||||| Sbjct 1094 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 1035 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 1034 AGCGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 975 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||||| | || | | || | | ||| | | Sbjct 974 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 915 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | || || || || | || || ||||| ||||||||| Sbjct 914 TCGAGCGTGATCGTCTTGCCCGTCANNGTCTTCACGAAGATCTGCATG 867 Score = 138 bits (152), Expect = 1e-27 Identities = 120/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| ||||||||| | || | ||||||||||| || |||||||| ||||| Sbjct 867 GCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 808 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 807 CAGCGTGCGCCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 748 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCT 131155 ||| || || ||||| ||| || |||| Sbjct 747 GATGCCCTCCTTGTCCTGGATCTTTTGCT 719 >seq102828 Length=2266 Score = 150 bits (166), Expect = 2e-31 Identities = 174/233 (75%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| | |||| ||||||||||| ||||||||||| ||||| Sbjct 1167 GCCACCACGCAGACGCAGCACCAGGTGTAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 1226 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 1227 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 1286 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||||| | || | | || | | ||| | Sbjct 1287 GATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCTGACGGCTCCAC 1346 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTT 131239 ||||| || | || || || || || || || ||||| |||||||| |||| Sbjct 1347 GTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT-ACTT 1398 >seq88141 Length=1707 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||||| | ||| | ||||||||||| ||||||||||| |||||| Sbjct 962 CCACCACGAAGGCGCAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 903 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| || |||| | |||||||||||| || ||| Sbjct 902 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGG 843 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||||| | || | | || | | ||| | | Sbjct 842 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 783 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || || || || || || ||||| ||||||||| Sbjct 782 TCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 735 Score = 125 bits (138), Expect = 7e-24 Identities = 101/122 (83%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| ||||||||| | || | ||||||||||||||||||||||| ||||| Sbjct 735 GCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTTTGAATGTTGTAGTCGCT 676 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| || |||| | |||||||||||| || || Sbjct 675 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGG 616 Query 131127 GA 131128 || Sbjct 615 GA 614 >seq76529 Length=2445 Score = 118 bits (130), Expect = 1e-21 Identities = 253/373 (68%), Gaps = 9/373 (2%) Strand=Plus/Plus Query 145123 AGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAA 145182 ||||||||| ||||| ||||| || || || | || || |||||| ||||||| | Sbjct 1106 AGACTCGTTGTTGCCGAGGATCTGGGCCGTTGAAGCCGTCGGCATGGGGGCCACCAGCAG 1165 Query 145183 TGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCATAG--- 145239 || |||||||| |||||||| | ||| | || || ||| |||| | ||| || Sbjct 1166 CGAGTTGCGCAGCCCGTGCTTGACCACGTCCTGTTTGAGGGTAGCCCAGTTCCACAGACC 1225 Query 145240 CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCC 145299 ||| | ||| | ||| ||||||||||| |||| || ||||||| |||||| || ||| Sbjct 1226 CGACGACGGGGTGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTGGCAGGCGAGCC 1285 Query 145300 TTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTCGCAAC-TCGCCTCCAGAGC 145356 || || | ||| | || |||| ||||||| ||| || | || ||||| || Sbjct 1286 CTGGAACGTCTCGTA--CGGGCCGAGTTCCTTGGCGATCTC-CATCGACGTCTCCATGGC 1342 Query 145357 GCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTA 145416 | || || || ||||| || | | |||||||| | || | ||||||||| | Sbjct 1343 AGCAAAGTAGATGGTCTCAAAGATGTTCTTGTTGAGCTCCCGAGCCTTCTCGCTCTCGAA 1402 Query 145417 CGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCG 145476 || | || || | ||| || || ||||| ||||| | || | |||||||| || Sbjct 1403 CGCGTAGTTCATGAGGATAAACGCGTCCGCGAGGCCCTGAACGCCAATACCGATGGGACG 1462 Query 145477 ATGTTTCATGTTG 145489 || ||||||| Sbjct 1463 GTGACGCATGTTG 1475 >seq52299 Length=3408 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| | || | || |||||| || |||||||| || Sbjct 663 CCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAA 604 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 603 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 544 Query 131128 ATTCCT 131133 |||||| Sbjct 543 ATTCCT 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471313784444160