Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23]
118,474 sequences; 235,999,877 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq88141 98.7 8e-16
seq102828 86.0 5e-12
seq96335 82.4 6e-11
>seq88141
Length=1707
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | ||| |||| ||||||||| |||||||| || |||||||||||| |
Sbjct 962 CCACCACGAAGGCGCAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 903
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || ||||||| | || ||||| ||| | || || ||||| ||||| ||
Sbjct 902 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGG 843
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| |||||| ||||| || | ||||| || | | | | | ||| ||||||
Sbjct 842 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 783
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||| || || || |||||||| || || || ||||||||
Sbjct 782 TCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 736
>seq102828
Length=2266
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | ||| |||| || ||||| |||||||| || |||||||||||| |
Sbjct 1168 CCACCACGCAGACGCAGCACCAGGTGTAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 1227
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || ||||||| | || ||||| || | || || ||||| ||||| ||
Sbjct 1228 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 1287
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| |||||| ||||| || | ||||| || | | | | | ||| ||||||
Sbjct 1288 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCTGACGGCTCCACG 1347
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||| || || || |||||||| || || || ||||||||
Sbjct 1348 TCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1394
>seq96335
Length=3561
Score = 82.4 bits (90), Expect = 6e-11
Identities = 154/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | ||| |||| |||||||| |||||||| || |||||||||||| |
Sbjct 1094 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 1035
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || ||||||| | || ||||| || | || || ||||| ||||| ||
Sbjct 1034 AGCGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 975
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| |||||| ||||| || | ||||| || | | | | | ||| ||||||
Sbjct 974 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 915
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||| || || || |||| || || || || ||||||||
Sbjct 914 TCGAGCGTGATCGTCTTGCCCGTCANNGTCTTCACGAAGATCTGCAT 868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404503092677260
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |