Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq95857 91.5 2e-13 seq99580 84.2 3e-11 >seq95857 Length=2020 Score = 91.5 bits (100), Expect = 2e-13 Identities = 175/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || || || |||| ||| || || || || || ||||| | |||||||| ||| Sbjct 1014 ATCTTCATCGGCCCCACGTTCTACCAGCGCCTGAAGCATATGGTCGACGACAAGATCCAC 955 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAA 15517 |||| |||| || | ||||| | ||| |||||||||| ||||| | | Sbjct 954 TCGCGCTCGCGTGGTCCCGTGACCATGCTGACGCGCCAGCCCATGGAGGGTCGTGCTCGC 895 Query 15518 GGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCGCC 15574 | |||||||| || | ||||||||||| || || |||||| ||||||| | Sbjct 894 GAAGGTGGCCTGCGTATGGGAGAGATGGAGCGCGATTG---TCTGGTCTCGCACGGCTCG 838 Query 15575 ACCCAATTCCTCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGC 15634 || | ||||||| || ||| |||| |||| ||| ||| || | |||||||| Sbjct 837 GCCAACTTCCTCATGGACCGCCTGTTCGCCAACTCGGACGCGTACCGTGTCCACGTGTGC 778 Query 15635 AAAGACTGCGGCATGAT 15651 | | ||||||||| || Sbjct 777 GATGTCTGCGGCATCAT 761 >seq99580 Length=8420 Score = 84.2 bits (92), Expect = 3e-11 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 126178 TTGGTGTAAATGTAGCGGGGAGCTGCC-GAATCCTTGCCTCCCTCCAACCGCGTGCCAAA 126236 |||||| |||| || || | |||| | | ||||||||| ||| ||| ||||| ||||| Sbjct 7178 TTGGTGAAAATATAACGAGC-GCTGGCTGCATCCTTGCCGCCCATCAAACGCGTACCAAA 7236 Query 126237 CTGACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTT 126296 ||||||| ||| || | || | |||||| ||| ||||||||||| || | || Sbjct 7237 CTGACCGATTGGCGACAGGAGGTGGATGTTGTTGCTTCCGACAAAGTCCTGAGCCATGTT 7296 Query 126297 GACAAT--GGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACG 126354 ||| || | | ||| | | ||||||||||| | ||| ||| ||||| | ||| Sbjct 7297 GACGATACAGCCCTGCAAA--CTTTGCTCGCCGTGGTGGTATGCGGAGTGCTCTGACACA 7354 Query 126355 TAGCCGCTCAGCTGCGCAACCTT 126377 ||||| ||| || || ||||| Sbjct 7355 TAGCCAGCCAGTTGTGCCACCTT 7377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610486574302400