Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq88141 100 2e-16 seq102828 89.7 4e-13 seq96335 87.8 2e-12 >seq88141 Length=1707 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| ||||| ||||| | | Sbjct 736 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCG 795 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| ||||| || || ||||||||||| || || ||||| || Sbjct 796 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 855 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | ||||| ||||| | ||| |||||| Sbjct 856 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 915 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| || || || || | ||| | || |||| Sbjct 916 ATTCAGAAGGAGTCGACGCTGCATCTGGTGCTGCG 950 >seq102828 Length=2266 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| || || ||||| | | Sbjct 1394 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCA 1335 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| ||||| || || ||||||||||| || || ||||| || Sbjct 1334 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 1275 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| ||||| | ||| |||||| Sbjct 1274 CAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 1215 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || |||| | || |||| |||| || || Sbjct 1214 ATTCAGAAGGAGTCGACGCTACACCTGGTGCTGCGTCTGCGTGGTGG 1168 >seq96335 Length=3561 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| || || ||||| | | Sbjct 868 ATGCAGATCTTCGTGAAGACNNTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 927 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| ||||| || || ||||||||||| || || || || || Sbjct 928 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 987 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | ||||| ||||| | ||| |||||| Sbjct 988 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGGCGCACGCTGAGCGACTACAAC 1047 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | || |||| ||||||| || Sbjct 1048 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGG 1094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419121953953810