Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq106243 118 2e-21 seq106475 98.7 2e-15 seq99580 91.5 3e-13 seq94487 86.0 1e-11 seq100720 84.2 4e-11 seq38157 84.2 4e-11 seq18755 84.2 4e-11 seq18754 84.2 4e-11 >seq106243 Length=9753 Score = 118 bits (130), Expect = 2e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223 || || | ||| |||| ||||| ||||| |||||||| || || ||||| | ||||| Sbjct 9559 CGTATCGCTGTGCTTGGCCCCAACGGTGCCGGTAAGTCGACGCTGATCAAGATGCTGACG 9500 Query 280224 GGCGAGACCCAGGCCACTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTA 280282 || ||| || | || ||| || | | | |||||||| || |||||| | || || Sbjct 9499 GGTGAGGTGGAGCCGAC-GAGCGGCCAGGTGTGGAAGCACCCTTCCATGCGTTTCGCCTA 9441 Query 280283 CGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATA 280342 ||| ||||||||||||||||||||||| ||| ||||| ||| ||| | ||||| || Sbjct 9440 CGTGGCTCAGCACGCTTTCCACCACATTGAGTCGCACCTCGACGAGACGGCCAACCAGTA 9381 Query 280343 CATTCAGTGGCG 280354 ||| |||||||| Sbjct 9380 CATCCAGTGGCG 9369 >seq106475 Length=1103 Score = 98.7 bits (108), Expect = 2e-15 Identities = 60/64 (94%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 1040 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 1099 Query 142563 CCCC 142566 |||| Sbjct 1100 CCCC 1103 >seq99580 Length=8420 Score = 91.5 bits (100), Expect = 3e-13 Identities = 125/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 ||||| || || | |||| ||||| || || || | ||||| ||||| ||||| Sbjct 7377 AAGGTGGCACAACTGGCTGGCTATGTGTCAGAGCACTCCGCATACCACCACGGCGAGCAA 7318 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 ||| ||||||| || || |||||| ||||||| ||| || || |||||||| || Sbjct 7317 AGTTTGCAGGGCTGTATCGTCAACATGGCTCAGGACTTTGTCGGAAGCAACAACATCCAC 7258 Query 218776 TTGCTGCTCCCCAA-CGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGAT 218826 | ||| || |||| ||||||||||||| | ||| | |||| || |||||| Sbjct 7257 CTCCTG-TCGCCAATCGGTCAGTTTGGTACGCGTTTGATGGGCGGCAAGGAT 7207 >seq94487 Length=3660 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| |||||||| || ||||| | |||||| || | | |||||||||||| | || Sbjct 803 GTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCC 744 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 || ||| ||||||||||||| | ||| || || || ||||| | | |||||| || Sbjct 743 GCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATACCCTCCAC 687 >seq100720 Length=1351 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 245 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 304 Query 142565 CCAC 142568 |||| Sbjct 305 CCAC 308 >seq38157 Length=1272 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || |||||||| || || || ||||||||||| || ||||||| || || ||||| | Sbjct 834 ATCCGCGGTCTCTCGGGCGGTCAGAAGGTCAAGCTCGTCATCGCCGCTGCCATGTGGAAC 775 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGC 280832 | || ||| || | || || || ||||| || ||||| ||||||||| | |||||| Sbjct 774 CGTCCGCACTTGTTGGTGCTGGATGAGCCGACGAACTACTTGGACCGCGCGGCGCTGGGC 715 Query 280833 GCTCTG 280838 || ||| Sbjct 714 GCGCTG 709 >seq18755 Length=750 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || |||||||| || || || ||||||||||| || ||||||| || || ||||| | Sbjct 185 ATCCGCGGTCTCTCGGGCGGTCAGAAGGTCAAGCTCGTCATCGCCGCTGCCATGTGGAAC 126 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGC 280832 | || ||| || | || || || ||||| || ||||| ||||||||| | |||||| Sbjct 125 CGTCCGCACTTGTTGGTGCTGGATGAGCCGACGAACTACTTGGACCGCGCGGCGCTGGGC 66 Query 280833 GCTCTG 280838 || ||| Sbjct 65 GCGCTG 60 >seq18754 Length=886 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || |||||||| || || || ||||||||||| || ||||||| || || ||||| | Sbjct 185 ATCCGCGGTCTCTCGGGCGGTCAGAAGGTCAAGCTCGTCATCGCCGCTGCCATGTGGAAC 126 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGC 280832 | || ||| || | || || || ||||| || ||||| ||||||||| | |||||| Sbjct 125 CGTCCGCACTTGTTGGTGCTGGATGAGCCGACGAACTACTTGGACCGCGCGGCGCTGGGC 66 Query 280833 GCTCTG 280838 || ||| Sbjct 65 GCGCTG 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026276597056634