Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq76103 123 2e-23 >seq76103 Length=1730 Score = 123 bits (136), Expect = 2e-23 Identities = 423/649 (65%), Gaps = 23/649 (4%) Strand=Plus/Plus Query 20134 CGGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTG-T 20192 |||||| || || || || || || |||||| | | || ||||| | || ||| | | Sbjct 1032 CGGAAATGGGCGCGGCGTTCGAGTAAGCTGCTTCTGGAGCGGCTCGACGTG-GTTCAGAT 1090 Query 20193 AGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAG 20252 | | ||||||||| || | ||| | |||||| || || | || ||| | || || | Sbjct 1091 ACACGTGGGCATCGCCAATAACGTGGACAAACTCGCCAGGCTTCAGCCCACTCACCTGCG 1150 Query 20253 CAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGT 20312 | | | || | | | ||||||||||| ||||| || || || | ||||||| Sbjct 1151 CTACAAGTCGCGTGAGCAACGCGTAGCTGGCAATATTAAACGGCACGCCAAGTCCCATGT 1210 Query 20313 CTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATA 20372 | |||| | ||| |||| ||| || || | ||| ||||| || || || || || || | Sbjct 1211 CGGCCGAGCGCTGGTACATCTGGCACGACAACTCGCCGTCGGCCACGTAGAACTGGCAGA 1270 Query 20373 ACAAGTGACAGGGCGGAAGCGCCATC--AACGACAAGTCCGCCGGGTTCCACGCACACAT 20430 ||| ||| || ||||| || |||||| | || | |||||||| |||||||| ||| Sbjct 1271 ACATGTGGCACGGCGGGAGTGCCATCTTATTGAGA--TCCGCCGGATTCCACGCCGACAG 1328 Query 20431 AATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTC 20490 | ||| | | ||| |||||| | | | | | | | | ||||| Sbjct 1329 CACGATCCGACGGTCGCTCGGATTCGTGCGCAGCTTGTGAATGACCTCGGCGAGCTGGTC 1388 Query 20491 AAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCA 20550 | ||||| || || ||||| || | | |||| |||| |||||||| || | ||| Sbjct 1389 CACGCCCTGACCAGTGTAGTCGGCGTTCATGTCCGTGTACTTGGCCCCAAAATGACGCCA 1448 Query 20551 CTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTG-CGCCAGGCCGCGCCCGG 20609 |||||| ||||| || ||||| | | | || | | | | | | ||| || || | | Sbjct 1449 CTGGAAGCCGTAGACCGGTCCGAGGT-CGCCAACTTCCCGCGACTGCAGTCCTCGACTGT 1507 Query 20610 CCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGA-CTCCTGTTCTTGAA-----A 20663 |||| |||| | ||| ||||| |||||| || | || |||| | || | Sbjct 1508 CCAGATACTCTCGGGACCCATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGT 1567 Query 20664 GCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCC 20723 || | || | |||| || | | |||||| |||||||| | | | ||||| |||| Sbjct 1568 GCGCACTCGTGTCA------CCACTGATAAACCACAGCAGCTCCTCCGCCACGCCGCGCC 1621 Query 20724 AAAACACCCGCTTTGTGGTTAGTAA-GGGA--AAGTGGTCCCGCAGACT 20769 | || || ||||| || || || || |||| | | ||||| |||||| Sbjct 1622 AGAAGACGCGCTTGGTCGTGAGCAACGGGAACACATTGTCCCTCAGACT 1670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440719159986160