Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq88141 98.7 8e-16 seq102828 96.9 3e-15 seq52299 96.9 3e-15 seq96335 93.3 3e-14 seq16837 87.8 1e-12 >seq88141 Length=1707 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || |||||||||||||| ||||| |||||||||||||||||| || || | || || Sbjct 953 AGGCGCAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTC-GCTCAGCGTGCG 895 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| || | |||||||| ||||| ||||| |||||||| || ||| | || ||| Sbjct 894 ACCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTC 835 Query 34029 TTTGTCCATAATTTTTTGCTT 34049 |||||| || |||||||| Sbjct 834 CTTGTCCTGGATCTTTTGCTT 814 >seq102828 Length=2266 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| |||||||||||||||||| || || Sbjct 1168 CCACCACGCAGACGCAGCACCAGGTGTAGCGTCGACTCCTTCTGAATGTTGTAGTC-GCT 1226 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| || || |||||||||||||| || ||| Sbjct 1227 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 1286 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || |||||||| Sbjct 1287 GATGCCCTCCTTGTCCTGGATCTTTTGCTT 1316 >seq52299 Length=3408 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || |||||||| || ||||||||||||||||| |||||||| || | Sbjct 664 ACCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 605 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || |||| |||| ||||||||||| || |||||||||||||| || Sbjct 604 AAGAGTGCGGC-CGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 551 >seq96335 Length=3561 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 1094 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCT 1036 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || ||| |||| || | |||||||| || || ||||| |||||||| || ||| Sbjct 1035 CAGCGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 976 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || |||||||| Sbjct 975 GATGCCCTCCTTGTCCTGGATCTTTTGCTT 946 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 866 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCT 808 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || ||| |||| || | |||||||| || || ||||| |||||||| || ||| Sbjct 807 CAGCGTGCGCCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 748 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCT 34048 | || ||| |||||| || ||||||| Sbjct 747 GATGCCCTCCTTGTCCTGGATCTTTTGCT 719 >seq16837 Length=2220 Score = 87.8 bits (96), Expect = 1e-12 Identities = 190/277 (69%), Gaps = 8/277 (3%) Strand=Plus/Minus Query 39936 GCCGCGGGCATGGACCTGAGGAGCGCATACGACTACGTGATTCCTCGCAA-CGACCGAAT 39994 |||||||| |||||||| | || |||||| |||||| || |||| || | || Sbjct 1861 GCCGCGGGTCTGGACCTGTCGGCTGCTTACGACGCCGTGATCCC-CGCAGGCGGC--AAG 1805 Query 39995 G--CTGGTGAAGACGGACATTGCTCTACAAC-TACCCAAAGAGTGCTACGGTAGAATAGC 40051 | || || ||||||||| | | || | | ||||| | | ||||||| | | || Sbjct 1804 GGCCTCGTCAAGACGGACCTGG-TCATCGCCGTACCCGACGGCTGCTACGCGCGCGTGGC 1746 Query 40052 GCCTCGGTCCGGACTGGCGCTGAAGCACGGTATCGACATTTCGGCCGGCGTCATAGATTC 40111 ||| || |||||||| ||||| ||| | ||||||| |||||||| || || | Sbjct 1745 GCCGCGCTCCGGACTCGCGCTCAAGAAGTTCATCGACACGGGCGCCGGCGTGATCGACGC 1686 Query 40112 TGACTACACGGGCAACGTGGGCGTGGTGATGGTGAACAACGGAGACGAGGCCTTTGTGGT 40171 |||||| ||||||||||||||| | || | ||| ||| | ||||| ||| || Sbjct 1685 CGACTACCGCGGCAACGTGGGCGTGATCCTGTTCAACCACGCGGCCGAGGACTTCCCCGT 1626 Query 40172 GCTTCGAGGAGACCGCATCGCCCAGCTCATACTGGAG 40208 || || |||||| | || |||||||| || ||| Sbjct 1625 CAAGCGCGGGGACCGCGTGGCGCAGCTCATCCTCGAG 1589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396489080856148