Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq96335 138 3e-27 seq102828 122 2e-22 seq88141 122 2e-22 seq102906 86.0 1e-11 seq9226 86.0 1e-11 >seq96335 Length=3561 Score = 138 bits (152), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||| || | || || || || | ||| || || ||||| || |||||| Sbjct 1095 TCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 1036 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||||| ||||| || | || || || ||||||||||||||||| || | || Sbjct 1035 CAGCGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 976 Query 288366 GATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 ||| || || || |||||||| ||| |||| ||||| || || || || || || | Sbjct 975 GATGCCCTCCTTGTCCTGGATCTTTTGCTTG-ACGTTGTCGATCGAGTCCGACGGCTCCA 917 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||||||||||||||| || |||| ||||| ||||| |||||||| Sbjct 916 CGTCGAGCGTGATCGTCTTGCCCGTCANNGTCTTCACGAAGATCTGCAT 868 >seq102828 Length=2266 Score = 122 bits (134), Expect = 2e-22 Identities = 169/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || || | ||| || || || || || |||| Sbjct 1164 CATG-CCACCACGCAGACGCAGCACCAGGTGTAGCGTCGACTCCTTCTGAATGTTGTAGT 1222 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| ||||| || | || || || ||||||||||| ||||| || Sbjct 1223 CGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGG 1282 Query 288362 CTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || || || |||||||| ||| || || ||||| || || || || || Sbjct 1283 GCGGGATGCCCTCCTTGTCCTGGATCTTTTGC-TTGACGTTGTCGATCGAGTCTGACGGC 1341 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 1342 TCCACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1394 >seq88141 Length=1707 Score = 122 bits (134), Expect = 2e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || ||||| | ||| || || || || || |||||| Sbjct 963 TCCACCACGAAGGCGCAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 904 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||||| ||||| || | || || || || |||||||||||||| || || Sbjct 903 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGG 844 Query 288366 GATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 ||| || || || |||||||| ||| |||| ||||| || || || || || || | Sbjct 843 GATGCCCTCCTTGTCCTGGATCTTTTGCTTG-ACGTTGTCGATCGAGTCCGACGGCTCCA 785 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || |||||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 784 CGTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 736 >seq102906 Length=6336 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || ||||| || ||| |||||||| || || || ||| || || Sbjct 15 GGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGCTCC 74 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| ||||| || ||||||||||| ||||| |||||||| Sbjct 75 ACGTCAAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAAATCTGCAT 124 >seq9226 Length=577 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 288365 GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 |||| || || || ||||| || ||| |||||||| || || || || || || | Sbjct 1 GGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATCGAGTCCGACGGCTCCA 60 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | ||||||||||| ||||| || ||||| ||||||||||| ||||||||| Sbjct 61 CGTCGAGCGTGATGGTCTTACCCGTCAGCGTCTTGACGAAAATCTGCATT 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177863745815372