Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq106243 105 1e-17 seq110277 91.5 3e-13 seq98218 91.5 3e-13 seq99580 86.0 1e-11 >seq106243 Length=9753 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 9344 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 9403 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 9404 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 9463 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || ||| | || | |||| | ||||| |||| ||| || || || Sbjct 9464 CTTCCACACCTGGCCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 9523 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACA 333521 || || ||||| || ||| | |||| Sbjct 9524 CTTACCGGCACCGTTGGGGCCAAGCACA 9551 >seq110277 Length=6173 Score = 91.5 bits (100), Expect = 3e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || || |||||||||| |||||| | ||||||||||| ||||| |||||||| | Sbjct 5565 GCTGATCGGTATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCT 5506 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 | | |||| ||| ||| | |||||| |||||||| || | || ||||| Sbjct 5505 GCTGTACTCGCTAGGTGTGTCGAAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGA 5446 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | || ||||| || || || || ||||| ||||| ||||| || Sbjct 5445 CATGATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 5401 >seq98218 Length=3782 Score = 91.5 bits (100), Expect = 3e-13 Identities = 233/347 (67%), Gaps = 6/347 (2%) Strand=Plus/Minus Query 243382 ATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAG 243441 ||||||||||| | | || |||||| | ||||| || ||||||||| | ||| | Sbjct 1935 ATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATGCACACGGAC 1876 Query 243442 TTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACG-GTCAAAC 243499 |||| ||| || ||||| || ||||| ||||||||| || || || || | Sbjct 1875 TTCGCGTGC-CTCATGTACTCCAAGCTGGTGAACAAGCTGCCGGA-GAGCCGCGTGCACG 1818 Query 243500 AAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCC 243559 | ||| | || || || | ||| | || ||| | | ||| | | || || Sbjct 1817 AGATCGTGCGCGACGCGGTGACGATCGAGCACGAGTTCGTGCGTGACTCGCTCCC-TGTG 1759 Query 243560 G-GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGC 243618 | ||| || |||||||| || | |||||| | ||||||||||| ||||| |||||||| Sbjct 1758 GAGCTGATCGGCATGAATTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGT 1699 Query 243619 ATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATG 243678 | | | |||| ||| ||| | |||||| |||||||| || | || ||| Sbjct 1698 CTGCTGTACTCGCTGGGTGTGTCGAAGATCTACAACGTAAAGAACCCGTTCGACTGGATG 1639 Query 243679 GAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 || | || ||||| || || || || ||||| ||||| ||||| || Sbjct 1638 GACATGATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 1592 >seq99580 Length=8420 Score = 86.0 bits (94), Expect = 1e-11 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 297434 TTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAAC 297493 || ||||||||||| || || || || |||||| || ||| ||| | || ||| ||| Sbjct 7178 TTGGTGAAAATATAACGAGCGCTGGCTGCATCCTTGCCGCCCATCAAACGCGTACCAAAC 7237 Query 297494 TGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTC 297553 || || ||| ||| || |||||| |||||||||||| | ||||| || | ||| Sbjct 7238 TGACCGATTGGCGACAGGAGGTGGATGTTGTTGCTTCCGACAAAGTCCTGAGCCATGTTG 7297 Query 297554 ACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAA 297613 ||||| || |||| | | ||||| ||||| || ||| ||||||| || || Sbjct 7298 ACGATACAGCCCTGCAAACTTTGCTCGCCGTGGTGGTATGCGGAGTGCTCTGACACATAG 7357 Query 297614 CCGCTGAACTGTGCAACCTTCA 297635 || | ||||| ||||||| Sbjct 7358 CCAGCCAGTTGTGCCACCTTCA 7379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101205885371900