Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq94487 131 2e-25 seq66249 118 1e-21 seq110277 82.4 9e-11 >seq94487 Length=3660 Score = 131 bits (144), Expect = 2e-25 Identities = 145/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||||||| ||| || || |||||||||| ||| || |||||||| || |||||| Sbjct 796 CCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTC 737 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || | || || || |||||||||||||| |||||||| |||||| Sbjct 736 TTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATACCCTCCACGGCTGCGAAC 677 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACT-TTGTGTCAAACCACTTCATCGCCCACTG 126243 || | |||||||| | | || || ||| | ||| ||||||| | |||||| || Sbjct 676 GCCAGCAGACGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTG 618 Query 126244 CGCCTTTTTCT 126254 ||| || |||| Sbjct 617 CGCTTTCTTCT 607 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 126089 TTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAAT 126148 |||||||||| ||| || |||||||| || |||||||| | |||||| || | || || Sbjct 3658 TTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAC 3599 Query 126149 GAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 126208 || |||||||||||||| |||||||| |||||||| | |||||||| | | || Sbjct 3598 GAGCCCGAGAAGAAGATACCCTCCACGGCTGCGAACGCCAGCAGACGCTCCGGGTACGA- 3540 Query 126209 CGCGACT-TTGTGTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 126267 || ||| | ||| ||||||| | |||||| ||||| || |||| | |||||||| Sbjct 3539 CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGAT 3480 Query 126268 GGTCTGGATCGC 126279 || | ||| || Sbjct 3479 CGTATCGATGGC 3468 Score = 116 bits (128), Expect = 4e-21 Identities = 173/243 (71%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 126089 TTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAAT 126148 |||||||||| ||| || |||||||| || |||||||| | |||||| || | || || Sbjct 548 TTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAC 489 Query 126149 GAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 126208 || |||||||||||||| |||||||| || ||||| | |||||||| | | || Sbjct 488 GAGCCCGAGAAGAAGATGCCCTCCACGGCTGCAAACGCCAGCAGACGCTCCGGGTACGA- 430 Query 126209 CGCGACT-TTGTGTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 126267 || ||| | || ||||||| | |||||| ||||| || |||| | |||||||| Sbjct 429 CGACACTCGCGGGTTGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGAT 370 Query 126268 GGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTAT 126327 || | ||| || | || | | ||| || | | ||| ||||||||| | || || Sbjct 369 CGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAAT 310 Query 126328 GAG 126330 ||| Sbjct 309 GAG 307 >seq66249 Length=1340 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 126089 TTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAAT 126148 |||||||||| ||| || |||||||| || |||||||| | |||||| || | || || Sbjct 3 TTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAC 62 Query 126149 GAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 126208 || |||||||||||||| |||||||| |||||||| | |||||||| | | || Sbjct 63 GAGCCCGAGAAGAAGATACCCTCCACGGCTGCGAACGCCAGCAGACGCTCCGGGTACGA- 121 Query 126209 CGCGACT-TTGTGTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 126267 || ||| | ||| ||||||| | |||||| ||||| || |||| | |||||||| Sbjct 122 CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGAT 181 Query 126268 GGTCTGGATCGC 126279 || | ||| || Sbjct 182 CGTATCGATGGC 193 >seq110277 Length=6173 Score = 82.4 bits (90), Expect = 9e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||| ||||| ||||| || | || ||| | Sbjct 5385 CTTGGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCAT 5444 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | || || ||||||||| ||| | || | | ||| || | | | || Sbjct 5445 GTCCATCCAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCTAGCGAGTACAG 5504 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 ||||| || | ||| |||| ||||||| |||| | |||||||||||||||| || Sbjct 5505 CAGACGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATACCGATCAG 5564 Query 125932 GT-TACATGGGAGCGCGTC 125949 | ||| ||||||| ||| Sbjct 5565 CTCCACA-GGGAGCGAGTC 5582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596468964119920