Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq102828 145 8e-30 seq88141 143 3e-29 seq96335 138 1e-27 seq107323 89.7 6e-13 seq49943 89.7 6e-13 >seq102828 Length=2266 Score = 145 bits (160), Expect = 8e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| || | || |||||| ||||| ||||| || ||| || || | Sbjct 1179 ACGCAGCACCAGGTGTAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACC 1238 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||||| || | || |||||| Sbjct 1239 GTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 1298 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| ||||| |||| ||| | | | || ||| || ||||| |||| ||||| Sbjct 1299 GTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCTGACGGCTCCACGTCGAGCGTGA 1357 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| |||||||| || ||||| ||||| Sbjct 1358 TCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1394 >seq88141 Length=1707 Score = 143 bits (158), Expect = 3e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| ||||| || |||||| ||||| ||||| || ||| || || || Sbjct 950 CGCAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCG 891 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| ||||| || || || ||||||||||||| || | || ||||||| Sbjct 890 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTG 831 Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| ||||| |||| ||| | | | || ||| || ||||| || | |||||| Sbjct 830 TCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGAT 772 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| |||||||| || ||||| ||||| Sbjct 771 CGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 736 >seq96335 Length=3561 Score = 138 bits (152), Expect = 1e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| || |||||| || || ||||| || ||| || ||| | Sbjct 1083 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGCCC 1024 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||| | || | || |||||| Sbjct 1023 GTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 964 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| ||||| |||| ||| | | | || ||| || ||||| |||| ||||| Sbjct 963 GTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 905 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| | ||||| || ||||| ||||| Sbjct 904 TCGTCTTGCCCGTCANNGTCTTCACGAAGATCTGCAT 868 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| || |||||| || || ||||| || ||| || ||| | Sbjct 855 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGCCC 796 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||| | || | || |||||| Sbjct 795 GTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 736 Query 42113 GTCCATGATTTTTTG 42127 |||| ||| ||||| Sbjct 735 GTCCTGGATCTTTTG 721 >seq107323 Length=4802 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 42084 CGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 42143 ||||||||||| | || | || |||||||||| |||||| || |||| | | | || Sbjct 4393 CGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTCAAT 4451 Query 42144 G-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGAT 42202 | ||||| || ||||| || | ||||||||| |||||||| || ||||| |||||||| Sbjct 4452 GCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGAT 4511 Query 42203 TTGCAT 42208 ||||| Sbjct 4512 CTGCAT 4517 >seq49943 Length=3916 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 42084 CGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 42143 ||||||||||| | || | || |||||||||| |||||| || |||| | | | || Sbjct 3454 CGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTCAAT 3512 Query 42144 G-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGAT 42202 | ||||| || ||||| || | ||||||||| |||||||| || ||||| |||||||| Sbjct 3513 GCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGAT 3572 Query 42203 TTGCAT 42208 ||||| Sbjct 3573 CTGCAT 3578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542408342584160