Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq110124 187 2e-42 seq76529 116 4e-21 seq64259 105 7e-18 >seq110124 Length=2655 Score = 187 bits (206), Expect = 2e-42 Identities = 510/769 (66%), Gaps = 43/769 (6%) Strand=Plus/Plus Query 94454 AGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCA 94513 |||||||| | || |||||| ||| | |||||||| ||||| || |||| || Sbjct 70 AGCTGTGGTTTGCCATATTGGACGCCCAGATCGAGACGGGAGTGCCCTTTATGTTGTACA 129 Query 94514 AGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGA--- 94570 ||||| | | |||| |||||| ||||||||| ||||||| |||| |||| | Sbjct 130 AGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACCTCGGCACGATCC---GCTCCAGCA 186 Query 94571 ATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGG 94630 | | ||| ||| | | ||||| || || ||||||||| | |||||||| ||| ||| Sbjct 187 ACTTATGCTGTGAGGTCATGGAGTACACGTCGCCGGACGAGGTGGCTGTGTGCAACTTGG 246 Query 94631 GCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATC 94690 || | ||| | | |||||| || | || | | || | | Sbjct 247 CGTCTGTGGCGCTGCCTAAGTTCGTGGAGGAAGGA-----GTTTTCAACTACCAGAAGT- 300 Query 94691 TGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTG---AACCTGAACAGGGTAATCG 94747 || | ||| |||| | |||| ||||| |||||||||| ||| |||| Sbjct 301 TGTATGAG---GTGACC--------AAGG-TGGTCACCCGTAACCTGAACAAGGTCATCG 348 Query 94748 ACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCG 94807 || |||| |||||||||| |||||| || || ||| || || || ||||| | Sbjct 349 ACGTCAACTACTACCCCGTCATCGAGGCGCGCAAGTCCAACATGCGTCACCGCCCCATTG 408 Query 94808 GCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCC-TACGACTCT 94866 | || ||||||||||| ||||||||||| | | | ||| || | | | ||| Sbjct 409 GTATTGGCGTCCAGGGCCTCGCGGACGCGTTTATCCTCATGAA-CTACGCGTTCGAGAGC 467 Query 94867 GTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCATGAAA 94926 | | || || | || |||||| ||||| | ||| || | || |||||| | Sbjct 468 GAGAAGGCCCGGGAGCTCAACAAGAACATCTTCGAGACCATCTACTTCGCCGCCATGGAG 527 Query 94927 CAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCC- 94985 || | | | |||| ||| ||| || |||| |||||| || ||||| Sbjct 528 ACGTCGATGGAGATTGCCAA---GGAACTCGGCCCGTACGAGACGTTCCAGGGCTCGCCT 584 Query 94986 -CTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCG---GGTCTGT 95041 || | || |||||| || ||||||||| | ||||| || | || ||| ||| ||| Sbjct 585 GCTAGCAA--GGGCATCTTCCAGTTCGACATGTGGGGCGTCACCCCGTCGTCGGGTATGT 642 Query 95042 ACGACTGGG--AAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCT 95099 |||||| | |||| | | | || || ||||| ||||| || ||| ||||||| Sbjct 643 GGAACTGGGCTACGCTCAAGGAG--GACGTGATCAAGCACGGACTGCGCAACTCGCTGCT 700 Query 95100 TGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGA 95159 |||||||||||||| ||||| || ||||| |||||||| |||||||||||||| |||| Sbjct 701 GGTGGCCCCCATGCCGACGGCTTCGACGGCCCAGATCCTCGGCAACAACGAGTCCATCGA 760 Query 95160 ACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 || | ||| |||||| |||||||| | || ||||| || || || ||| Sbjct 761 GCCGTACACGTCCAACATGTACAACCGCCGAGTGCTGGCTGGCGAGTTC 809 >seq76529 Length=2445 Score = 116 bits (128), Expect = 4e-21 Identities = 452/697 (65%), Gaps = 45/697 (6%) Strand=Plus/Minus Query 94472 TGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCA 94531 |||||| ||| | |||||||| ||||| || |||| ||||||| ||| |||| || Sbjct 1773 TGGACGCCCAGATCGAGACGGGAGTGCCCTTTATGTTGTACAAGGACGCTGCCAACCGCA 1714 Query 94532 AGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGA---ATCTGTGCACCGAGATTG 94588 |||| ||||||||| ||||||| |||| |||| | | | ||| ||| | Sbjct 1713 AGTCGAACCAGCAGAACCTCGGCACGATCC---GCTCCAGCAACTTATGCTGTGAGGTGA 1657 Query 94589 TCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCA 94648 | ||||| || || ||||||||| | |||||||| ||| | | || | ||| ||| Sbjct 1656 TGGAGTACACGTCGCCGGACGAGGTGGCTGTGTGCAACTTAGCGTCTGTGGCGCTGCCCA 1597 Query 94649 CTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGT--GAA 94706 |||||| || | || | | || | || || |||| ||| Sbjct 1596 AGTTCGTGGAGGAAGGA-----GTTTTCAACTACC----------AGAAG-TTGTACGAA 1553 Query 94707 CTTCGCGGGAAGGATGGTCTTG---AACCTGAACAGGGTAATCGACAAGAACTTCTACCC 94763 | | |||| ||||| ||| | |||| ||| |||||| |||| |||||| Sbjct 1552 GTGACC---AAGG-TGGTCACCCGCAACTTAAACAAGGTCATCGACGTCAACTACTACCC 1497 Query 94764 CGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGG 94823 ||| |||||| || || ||| || || || |||||||| || ||||| ||||| Sbjct 1496 CGTGATCGAGGCGCGCAAGTCCAACATGCGTCACCGTCCCATCGGTATTGGCGTTCAGGG 1437 Query 94824 TTTCGCGGACGCGCTGGTGATGATGCGTCTGCCC-TACGACTCTGTCGACGCGGCGGGTT 94882 ||||||||||| | | | ||| || | | | ||| | | || || Sbjct 1436 CCTCGCGGACGCGTTTATCCTCATGAA-CTACGCGTTCGAGAGCGAGAAGGCTCGGGAGC 1378 Query 94883 TGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGG 94942 | || |||||| || || | ||| || | | |||||| | || | | | | Sbjct 1377 TCAACAAGAACATCTTTGAGACCATCTACTTTGCTGCCATGGAGACGTCGATGGAGATCG 1318 Query 94943 CCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACA-GGGCATT 95001 ||| ||| ||| || |||| |||||| || ||||| | | || |||||| Sbjct 1317 CCAA---GGAACTCGGCCCGTACGAGACGTTCCAGGGCTCGCC-TGCCAGCAAGGGCATC 1262 Query 95002 TTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCG---GGTCTGTACGACTGGG--AAGCTC 95056 || ||||||||| | ||||| || | || ||| ||||||| |||||| | ||| Sbjct 1261 TTCCAGTTCGACATGTGGGGCGTCACCCCGTCGTCGGGTCTGTGGAACTGGGCTACCCTC 1202 Query 95057 TACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCA 95116 | | || || |||| ||||| || ||| ||||||| |||||||||||||| | Sbjct 1201 AAACAG--GACGTGGTCAAGCACGGGCTGCGCAACTCGCTGCTGGTGGCCCCCATGCCGA 1144 Query 95117 CGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTC 95153 |||| || ||||| |||||||| |||||||||||||| Sbjct 1143 CGGCTTCAACGGCCCAGATCCTCGGCAACAACGAGTC 1107 >seq64259 Length=514 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132 ||||||| || || || ||| | ||||| ||| || |||| ||||| ||||| || ||| Sbjct 1 ACATCCGAGGCACGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAACG 60 Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192 || | ||||| |||||||||||||| || || | | | ||||| || ||||| |||| Sbjct 61 ACACCGCGCGGTACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTCGCCATCTACT 120 Query 94193 TCGAGCCCTGGCACGC 94208 | ||||| |||||||| Sbjct 121 TGGAGCCTTGGCACGC 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493990552045040