Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq108735 95.1 9e-15 seq23848 95.1 9e-15 seq53659 87.8 1e-12 >seq108735 Length=5799 Score = 95.1 bits (104), Expect = 9e-15 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 ||||||| || ||| | ||| ||| | || |||||||||||||| ||||||| || Sbjct 2324 CACCATCTTCCACTGGAGCCGCGACCACCGCGTGCACCACAAGTACTCGGACACGAGCGC 2265 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 |||||| |||||| | | | || |||| ||| ||||| |||| ||||| || | | Sbjct 2264 CGACCCGCACAACTCGGGCCGCGGCTTCTTCTTCGCGCACATGGGCTGGCTGCTGGTCAA 2205 Query 108573 CAAGGACCCCGACGTGATCTCGGCCGG 108599 ||||||||| | |||||| |||||| Sbjct 2204 GAAGGACCCCAAGGTGATCAAGGCCGG 2178 >seq23848 Length=866 Score = 95.1 bits (104), Expect = 9e-15 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 ||||||| || ||| | ||| ||| | || |||||||||||||| ||||||| || Sbjct 387 CACCATCTTCCACTGGAGCCGCGACCACCGCGTGCACCACAAGTACTCGGACACGAGCGC 446 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 |||||| |||||| | | | || |||| ||| ||||| |||| ||||| || | | Sbjct 447 CGACCCGCACAACTCGGGCCGCGGCTTCTTCTTCGCGCACATGGGCTGGCTGCTGGTCAA 506 Query 108573 CAAGGACCCCGACGTGATCTCGGCCGG 108599 ||||||||| | |||||| |||||| Sbjct 507 GAAGGACCCCAAGGTGATCAAGGCCGG 533 >seq53659 Length=1010 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 108374 TGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCT 108433 ||||| | ||| | ||||||||||| ||| | | ||| | || ||| ||| Sbjct 993 TGTGGTCGCACCGCGGCTACAAGGCCAAGCTGCCGCTGCGCGTGGTGCTCATGCTGTGCA 934 Query 108434 TCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACA 108493 |||| |||| || ||||||| ||||| || ||| ||| | || ||||||| Sbjct 933 ACTCGATGGCCTTCGAGGGCACCATCTTCGAGTGGTCGCGCGACCACCGCGTGCACCACA 874 Query 108494 AGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACG 108553 || ||| ||||||||||||||||| |||||| | | | || ||| ||||||||| Sbjct 873 AGGCCTCGGACACGACGGCCGACCCGCACAACTCGGGCCGCGGCCTCTTCTTCTCGCACA 814 Query 108554 TGGGATGGCTCATGATGACCAAGGAC 108579 |||| ||| ||||| || |||| || Sbjct 813 TGGGCTGGGTCATGGTGCGCAAGCAC 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381221557538256