Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq98218 134 1e-26 seq110277 120 3e-22 seq96335 120 3e-22 seq102828 118 1e-21 seq88141 118 1e-21 >seq98218 Length=3782 Score = 134 bits (148), Expect = 1e-26 Identities = 249/362 (69%), Gaps = 15/362 (4%) Strand=Plus/Minus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| ||||||| ||| |||||| |||| || ||||| || ||||||||||| Sbjct 1935 ATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATGCACACGGAC 1876 Query 52542 TTTGCGTGCCTC---TACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATC 52598 || ||||||||| |||| |||| | |||| | || || |||| | | Sbjct 1875 TTCGCGTGCCTCATGTACTCCAAGCTG---GTGAAC---AAGCTGC---CGGAGAGCCGC 1825 Query 52599 CTGAGCATGTTCAAG---GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTG 52655 || | | || | || |||||| | ||||| | ||||| | | | |||| Sbjct 1824 GTGCACGAGATCGTGCGCGACGCGGTGACGATCGAGCACGAGTTCGTGCGTGACTCGCTC 1765 Query 52656 CCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCG 52715 || || |||||| | |||||||| || | ||||||| ||||||||||||| ||||| Sbjct 1764 CCTGTGGAGCTGATCGGCATGAATTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCC 1705 Query 52716 GATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAG 52775 || |||||| || ||| || | | ||| || ||||| || ||||| || Sbjct 1704 GACCGTCTGCTGTACTCGCTGGGTGTGTCGAAGATCTACAACGTAAAGAACCCGTTCGAC 1645 Query 52776 TTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAG 52835 | ||| ||| || ||||| |||||||||||||||||||||||||||| || |||||| Sbjct 1644 TGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAG 1585 Query 52836 TA 52837 || Sbjct 1584 TA 1583 >seq110277 Length=6173 Score = 120 bits (132), Expect = 3e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 52617 GCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATG 52676 |||||| | ||||| | ||||| | | | |||| || || |||||| | || ||| Sbjct 5612 GCGGTGACGATCGAGCACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGCTGATCGGTATG 5553 Query 52677 AACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC 52736 ||| | | ||||||| ||||||||||||| ||||| || |||||| || ||| Sbjct 5552 AACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTA 5493 Query 52737 GGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTT 52796 || | | ||| || ||||| || ||||| || | ||| ||| || ||||| Sbjct 5492 GGTGTGTCGAAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTG 5433 Query 52797 GAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||||||||||||||||| || |||||||| Sbjct 5432 CAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 5392 >seq96335 Length=3561 Score = 120 bits (132), Expect = 3e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | | |||||||| || ||||||||||||||| Sbjct 1094 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 1035 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||||||||| || || || | |||| |||||||| ||||| || || Sbjct 1034 AGCGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 975 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| ||||| || | | || | | ||| | || |||||| Sbjct 974 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 915 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| ||| | ||| || || |||| || || || || ||||||||| Sbjct 914 TCGAGCGTGATCGTCTTGCCCGTCANNGTCTTCACGAAGATCTGCATG 867 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | |||||||| || |||||||||||||| Sbjct 867 GCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 808 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| |||||| || || || || | |||| |||||||| ||||| || || Sbjct 807 CAGCGTGCGCCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 748 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG 138533 || || || ||||| ||| ||||| Sbjct 747 GATGCCCTCCTTGTCCTGGATCTTTTG 721 >seq102828 Length=2266 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | |||| | |||||||| ||||||||||||||||| Sbjct 1167 GCCACCACGCAGACGCAGCACCAGGTGTAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 1226 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || || | |||| || ||||| ||||| || || Sbjct 1227 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 1286 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| ||||| || | | || | | ||| | || |||||| Sbjct 1287 GATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCTGACGGCTCCAC 1346 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | ||| || || ||||| || || || || |||||||| Sbjct 1347 GTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1394 >seq88141 Length=1707 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||||||| || || |||||| || || || || | | Sbjct 929 GACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCA 870 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || || || || ||||| ||| ||||| || | Sbjct 869 AAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACG 810 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | || |||||| || | ||| | ||| || || ||||| || || Sbjct 809 TTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTC 750 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 749 ACGAAGATCTGCATG 735 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | |||||||||||||||||||||||||| Sbjct 735 GCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTTTGAATGTTGTAGTCGCT 676 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || || | | |||| |||||||| ||||| || || Sbjct 675 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGG 616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495527472605280