Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq102828 156 4e-33 seq88141 156 4e-33 seq96335 149 6e-31 seq110277 102 8e-17 seq98218 96.9 3e-15 seq110124 93.3 4e-14 seq107323 84.2 2e-11 seq49943 84.2 2e-11 >seq102828 Length=2266 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| |||| ||| ||||| || ||||| ||||| |||| | Sbjct 1168 CCACCACGCAGACGCAGCACCAGGTGTAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 1227 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || |||||| |||||| |||||||| ||||| || Sbjct 1228 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 1287 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||||| |||| |||| | ||| | ||| || Sbjct 1288 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTG-TCGATCGAGTCTGACGGCTCCAC 1346 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||| ||||| || || || || |||||||| Sbjct 1347 GTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1394 >seq88141 Length=1707 Score = 156 bits (172), Expect = 4e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | |||| ||||| ||| | ||| ||||| || ||||| ||||| |||| Sbjct 963 TCCACCACGAAGGCGCAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 904 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| || || ||||| || ||||| |||||| |||||||| ||||| || Sbjct 903 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGG 844 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| ||| || ||||||| |||| |||| | ||||| ||| | Sbjct 843 GATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTG-TCGATCGAGTCCGACGGCTCCA 785 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | || | ||| ||||| ||||| || || || || ||||||||| Sbjct 784 CGTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 735 >seq96335 Length=3561 Score = 149 bits (164), Expect = 6e-31 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | |||| ||||| || | ||| ||||| || || || ||||| |||| Sbjct 1095 TCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 1036 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 1035 CAGCGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 976 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| ||| || ||||||| |||| |||| | ||||| ||| | Sbjct 975 GATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTG-TCGATCGAGTCCGACGGCTCCA 917 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | |||| || | ||| ||||| |||| || || || || ||||||||| Sbjct 916 CGTCGAGCGTGATCGTCTTGCCCGTCANNGTCTTCACGAAGATCTGCATG 867 Score = 109 bits (120), Expect = 5e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| || | ||| ||||| || || || ||||| |||| | Sbjct 866 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 807 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 806 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 747 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCT 127034 ||||||||||||||| ||| || |||| Sbjct 746 ATGCCCTCCTTGTCCTGGATCTTTTGCT 719 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 126990 GCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACG 127048 ||||||| || || || ||||||||||||||| ||| || ||||||| ||||| ||| Sbjct 573 GCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGT-CGATC 515 Query 127049 GTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 127108 | ||||| ||| || || | || | || ||||| ||||||||||| || || ||| Sbjct 514 GAGTCCGACGGCTCCACGTCCAGCGTGATAGTCTTGCCCGTCAGAGTTTTCACGAAGATC 455 Query 127109 TGCAT 127113 ||||| Sbjct 454 TGCAT 450 >seq110277 Length=6173 Score = 102 bits (112), Expect = 8e-17 Identities = 127/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| | | | | ||| | |||||||||| || || |||||||| ||||| || Sbjct 5558 GGTATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCT-GTA 5500 Query 47472 CA-GCTAAA-GTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 | |||| || || ||||| ||| || |||| || ||||| | ||| ||| | Sbjct 5499 CTCGCTAGGTGTGTCG-AAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGA 5441 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||| ||||||||||||||||||||||||||||||| ||||| || Sbjct 5440 TCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 5392 >seq98218 Length=3782 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || ||||| ||| | | ||| | |||||||||| || || |||||||| ||||| || Sbjct 1749 GGCATGAATTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCT-GTA 1691 Query 47472 CA-GCTAAA-GTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 | ||| || || ||||| ||| || |||| || ||||| | ||| ||| | Sbjct 1690 CTCGCTGGGTGTGTCG-AAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGA 1632 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||| ||||||||||||||||||||||||||||||| ||||| || Sbjct 1631 TCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 1583 >seq110124 Length=2655 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 146077 AACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCG 146136 |||||||| || || || || | |||| |||| ||| ||||||||| |||||| Sbjct 808 AACTCGCCAGCCAGCACTCGGCGGTTGTACATGTTGGACGTGTACGGCTCGATGGACTCG 749 Query 146137 TTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTT 146196 ||||| ||||| ||||| ||||||| ||| || |||||| |||||||||| ||||| Sbjct 748 TTGTTGCCGAGGATCTGGGCCGTCGAAGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTG 689 Query 146197 CTCACGCCGTG 146207 | || ||||| Sbjct 688 CGCAGTCCGTG 678 >seq107323 Length=4802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 |||||||| || || || ||||||||||||||| |||||||||||||| | || | | Sbjct 4393 CGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATG 4452 Query 127049 GTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 127108 |||| | ||| || || | || | || ||||| ||||| || || ||||| ||| Sbjct 4453 CTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATC 4512 Query 127109 TGCATG 127114 |||||| Sbjct 4513 TGCATG 4518 >seq49943 Length=3916 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 |||||||| || || || ||||||||||||||| |||||||||||||| | || | | Sbjct 3454 CGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATG 3513 Query 127049 GTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 127108 |||| | ||| || || | || | || ||||| ||||| || || ||||| ||| Sbjct 3514 CTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATC 3573 Query 127109 TGCATG 127114 |||||| Sbjct 3574 TGCATG 3579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474796618977760