Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq88141 93.3 4e-14 seq110124 89.7 5e-13 >seq88141 Length=1707 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||| || || || | || ||| ||||||||||| || ||||| || || || || |||| Sbjct 964 TTCCACCACGAAGGCGCAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGC 905 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | || | || || | || || || || | |||| || |||||||| |||| Sbjct 904 TCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCG 845 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 | ||||| || || || || || ||||| |||| || | || | | ||| || | ||| Sbjct 844 GGATGCCCTCCTTGTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCC 786 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| ||||| || || || || || || || ||||| Sbjct 785 ACGTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 736 >seq110124 Length=2655 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 124178 GCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAAT 124237 |||||| |||| ||||||||| ||||||| |||||||||||| | || || || || Sbjct 677 GCACGGACTGCGCAACTCGCTGCTGGTGGCCCCCATGCCGACGGCTTCGACGGCCCAGAT 736 Query 124238 TTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTT 124297 | || |||||||| ||| ||||||||| ||| ||| ||||| || |||||| | Sbjct 737 CCTCGGCAACAACGAGTCCATCGAGCCGTACACGTCCAACATGTACAACCGCCGAGTGCT 796 Query 124298 AGCCGGCGATTT 124309 || ||||| || Sbjct 797 GGCTGGCGAGTT 808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451333817161040