Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq94487 122 1e-22 seq66249 105 8e-18 seq110277 82.4 9e-11 >seq94487 Length=3660 Score = 122 bits (134), Expect = 1e-22 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||||||| ||| || || |||||||||| ||| || |||||||| || |||||| Sbjct 796 CCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTC 737 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | || || ||||| ||||||||||| |||||||| |||||| Sbjct 736 TTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATACCCTCCACGGCTGCGAAC 677 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACT-TTGTATCAAACCACTTCATCGCCCACTG 127716 || | |||||||| | | || || ||| | || ||||||| | |||||| || Sbjct 676 GCCAGCAGACGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTG 618 Query 127717 TGCCTTTTTCT 127727 || || |||| Sbjct 617 CGCTTTCTTCT 607 Score = 105 bits (116), Expect = 8e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 127562 TTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAAT 127621 |||||||||| ||| || |||||||| || |||||||| | |||||| || | || || Sbjct 3658 TTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAC 3599 Query 127622 GAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681 ||||| ||||||||||| |||||||| |||||||| | |||||||| | | || Sbjct 3598 GAGCCCGAGAAGAAGATACCCTCCACGGCTGCGAACGCCAGCAGACGCTCCGGGTACGA- 3540 Query 127682 CGGGACT-TTGTATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGAC 127740 || ||| | || ||||||| | |||||| || || || |||| | ||| |||| Sbjct 3539 CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGAT 3480 Query 127741 GGTCTGGATCGC 127752 || | ||| || Sbjct 3479 CGTATCGATGGC 3468 Score = 102 bits (112), Expect = 1e-16 Identities = 170/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 127562 TTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAAT 127621 |||||||||| ||| || |||||||| || |||||||| | |||||| || | || || Sbjct 548 TTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAC 489 Query 127622 GAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681 ||||| ||||||||||| |||||||| || ||||| | |||||||| | | || Sbjct 488 GAGCCCGAGAAGAAGATGCCCTCCACGGCTGCAAACGCCAGCAGACGCTCCGGGTACGA- 430 Query 127682 CGGGACT-TTGTATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGAC 127740 || ||| | | ||||||| | |||||| || || || |||| | ||| |||| Sbjct 429 CGACACTCGCGGGTTGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGAT 370 Query 127741 GGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTAT 127800 || | ||| || | || | | ||| || | | ||| ||||||||| | || || Sbjct 369 CGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAAT 310 Query 127801 GAG 127803 ||| Sbjct 309 GAG 307 >seq66249 Length=1340 Score = 105 bits (116), Expect = 8e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 127562 TTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAAT 127621 |||||||||| ||| || |||||||| || |||||||| | |||||| || | || || Sbjct 3 TTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAC 62 Query 127622 GAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681 ||||| ||||||||||| |||||||| |||||||| | |||||||| | | || Sbjct 63 GAGCCCGAGAAGAAGATACCCTCCACGGCTGCGAACGCCAGCAGACGCTCCGGGTACGA- 121 Query 127682 CGGGACT-TTGTATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGAC 127740 || ||| | || ||||||| | |||||| || || || |||| | ||| |||| Sbjct 122 CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGAT 181 Query 127741 GGTCTGGATCGC 127752 || | ||| || Sbjct 182 CGTATCGATGGC 193 >seq110277 Length=6173 Score = 82.4 bits (90), Expect = 9e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||| ||||| ||||| || | || ||| | Sbjct 5385 CTTGGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCAT 5444 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 127344 ||||| | || || ||||||||| ||| | || | | ||| || | | | || Sbjct 5445 GTCCATCCAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCTAGCGAGTACAG 5504 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 ||||| || | ||| |||| ||||||| |||| | |||||||||||||||| || Sbjct 5505 CAGACGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATACCGATCAG 5564 Query 127405 GT-TACATGGGAGCGCGTC 127422 | ||| ||||||| ||| Sbjct 5565 CTCCACA-GGGAGCGAGTC 5582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612598641849840