Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq59841 113 7e-20 seq98218 104 4e-17 seq110277 89.7 8e-13 >seq59841 Length=830 Score = 113 bits (124), Expect = 7e-20 Identities = 163/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCT---CAGATAGTACAT 203895 ||||||||| ||||||| ||||||| |||| | || || || |||||||| Sbjct 366 CTTGTCCACGGTGAACTTGATGGCGT---CGGCTTTCGGGCGTCCGCGCATGTAGTACAT 310 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||||||||| || ||||||| ||| |||| | |||||| || | || ||||| | | | Sbjct 309 GCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTTGCTGATGGT 250 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGC 204015 |||||||| ||||| ||||| || ||||| || ||| ||| | | | || || || Sbjct 249 CGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTACGCACCGCGGTCGGC 190 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAAC 204064 | || | | | | ||||||| |||||||||||||||||| || Sbjct 189 CGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCACACCGTCTTGTAC 141 >seq98218 Length=3782 Score = 104 bits (114), Expect = 4e-17 Identities = 232/345 (67%), Gaps = 5/345 (1%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||||||||||||||||||||||| || || || ||||| | |||| ||||| Sbjct 1597 CTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAACGGGTT 1656 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| |||| ||| ||||| | || || | ||||| | ||| ||||| || || Sbjct 1657 CTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAGCAGACGGTCGGCCACGAACTC 1716 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || | | || || || | |||| || ||||||| || Sbjct 1717 GATGTACTGGCACATGAGCCCCGAATTCATGCCGATCAGCTCCACAGGGAGCGAGTCACG 1776 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACC 159887 || ||||| | ||| ||| ||||| ||| ||| |||| || | || || | | Sbjct 1777 CACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCT-CGTGCACGCGGCTCTCCG 1835 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||| || | | | | ||| ||||||||| ||||| ||||| |||| Sbjct 1836 GCAGCTTGTTCACCAGCTTGGAGT---ACATGAGGCACGCGAAGTCCGTGTGCATGCCCT 1892 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGA 159992 |||| || ||| | |||||| || | | | ||||| ||||||| Sbjct 1893 CGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGA 1937 >seq110277 Length=6173 Score = 89.7 bits (98), Expect = 8e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||||||||||||||||||||||| || || || ||||| | |||| ||||| Sbjct 5406 CTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAACGGGTT 5465 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| |||| ||| ||||| | || || | ||||| | ||| ||||| || || Sbjct 5466 CTTTACGTTGTAGATCTTCGACACACCTAGCGAGTACAGCAGACGGTCGGCCACGAACTC 5525 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || || |||| || || | |||| || ||||||| || Sbjct 5526 GATGTACTGGCACATGAGCGCAGAGTTCATACCGATCAGCTCCACAGGGAGCGAGTCACG 5585 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGC 159855 || ||||| | ||| ||| ||||| Sbjct 5586 CACGAACTCGTGCTCGATCGTCACCGC 5612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793977634785440