Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq96335 161 1e-34 seq102828 159 4e-34 seq88141 158 1e-33 seq52299 113 5e-20 seq107323 98.7 1e-15 seq49943 98.7 1e-15 seq102906 84.2 2e-11 >seq96335 Length=3561 Score = 161 bits (178), Expect = 1e-34 Identities = 178/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| || || || | | ||||| |||||| |||| || |||||| ||||| ||||| Sbjct 1101 TTAGTTTCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTA 1042 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||| || |||||| |||| |||||||||||||| ||||| |||| ||||||||||| Sbjct 1041 GTCGCTCAGCGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 982 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 | ||| | || |||||||||| |||||| | ||||| ||| | | | || ||| || Sbjct 981 AGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACG 923 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || | |||||| || |||||||||| || || || ||||| ||||| Sbjct 922 GCTCCACGTCGAGCGTGATCGTCTTGCCCGTCANNGTCTTCACGAAGATCTGCAT 868 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||| |||| || |||||| ||||| ||||||||| Sbjct 868 TGCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGC 809 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || |||||| |||| || ||||||||||| ||||| |||| ||||||||||| | || Sbjct 808 TCAGCGTGCGCCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCG 749 Query 46485 GCACGCTCTCCTTGTCCATGATCTT 46509 | | || |||||||||| |||||| Sbjct 748 GGATGCCCTCCTTGTCCTGGATCTT 724 Score = 93.3 bits (102), Expect = 5e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 46470 GCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACC 46528 |||||||||| | ||| | || |||||||||| |||||| | ||||| ||| | | | | Sbjct 573 GCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGA-CGTTGTCGATC 515 Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588 | ||| || ||||| |||| |||||| || ||||||||||| ||||| || ||||| Sbjct 514 GAGTCCGACGGCTCCACGTCCAGCGTGATAGTCTTGCCCGTCAGAGTTTTCACGAAGATC 455 Query 46589 TGCAT 46593 ||||| Sbjct 454 TGCAT 450 >seq102828 Length=2266 Score = 159 bits (176), Expect = 4e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||| || | || |||||| || || ||||||||| Sbjct 1166 TGCCACCACGCAGACGCAGCACCAGGTGTAGCGTCGACTCCTTCTGAATGTTGTAGTCGC 1225 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||| ||||| |||| |||||||||||||| || Sbjct 1226 TCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCG 1285 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || |||||||||| |||||| | ||||| ||| | | | || ||| || ||| Sbjct 1286 GGATGCCCTCCTTGTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCTGACGGCTCC 1344 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||| || |||||||||||||| || || ||||| ||||| Sbjct 1345 ACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1394 >seq88141 Length=1707 Score = 158 bits (174), Expect = 1e-33 Identities = 166/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||||||||| || |||||| || || ||||||||| || ||||| || Sbjct 950 CGCAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCG 891 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| ||||||||||||| ||| | || ||||||| Sbjct 890 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTG 831 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| | ||||| ||| | | | || ||| || ||||| || | |||||| Sbjct 830 TCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGAT 772 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||||||||| || || ||||| ||||| Sbjct 771 CGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 736 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||| |||| || ||||||||| || ||||||||| Sbjct 736 TGCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTTTGAATGTTGTAGTCGC 677 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||| || || |||| ||||||||||||| || Sbjct 676 TCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCG 617 Query 46485 G 46485 | Sbjct 616 G 616 >seq52299 Length=3408 Score = 113 bits (124), Expect = 5e-20 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| |||| || |||||||| ||||| |||||||| || |||||||| | Sbjct 652 ACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCC 593 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || ||||||||||||||||| |||| |||||||||||| Sbjct 592 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 551 >seq107323 Length=4802 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC 46528 ||||||||||| | ||| | || |||||||||| ||| |||| ||||| | | | || Sbjct 4393 CGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTCAAT 4451 Query 46529 G-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGAT 46587 | ||||| || ||||| |||| ||||||||| ||||||||||| || || |||||||| Sbjct 4452 GCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGAT 4511 Query 46588 TTGCAT 46593 ||||| Sbjct 4512 CTGCAT 4517 >seq49943 Length=3916 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC 46528 ||||||||||| | ||| | || |||||||||| ||| |||| ||||| | | | || Sbjct 3454 CGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTCAAT 3512 Query 46529 G-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGAT 46587 | ||||| || ||||| |||| ||||||||| ||||||||||| || || |||||||| Sbjct 3513 GCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGAT 3572 Query 46588 TTGCAT 46593 ||||| Sbjct 3573 CTGCAT 3578 >seq102906 Length=6336 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 46470 GCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACC 46528 |||||||||| | ||| | || |||||||||| ||||||| ||| | ||| | | | | Sbjct 1 GCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATC 59 Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588 | |||| || ||||| || | ||||||||| ||||||||||| || || || || || Sbjct 60 GAGTCGGACGGCTCCACGTCAAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAAATC 119 Query 46589 TGCAT 46593 ||||| Sbjct 120 TGCAT 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564401324322480