Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq94487 111 2e-19 seq66249 93.3 5e-14 seq95307 89.7 6e-13 >seq94487 Length=3660 Score = 111 bits (122), Expect = 2e-19 Identities = 141/192 (73%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC---AAAGTCG-CGTTCCTTTGCTGA 102181 ||||||||| | ||||| | ||||||| || | | |||| ||| || | || Sbjct 609 AAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCGTCGTACC----CGGA 664 Query 102182 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTAT 102241 ||| || | || || || || ||||||||||||||||| || || |||||| | || Sbjct 665 GCGTCTGCTGGCGTTCGCAGCCGTGGAGGGTATCTTCTTCTCGGGCTCGTTCTGCTCCAT 724 Query 102242 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 102301 | |||||||||||||| || |||||||| || || ||||||| |||||||| ||| Sbjct 725 CTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAG 784 Query 102302 TCGTGACGAGGG 102313 ||||||||||| Sbjct 785 CCGTGACGAGGG 796 Score = 104 bits (114), Expect = 3e-17 Identities = 173/248 (70%), Gaps = 8/248 (3%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| || ||||||| | |||||| | || || | |||||| | Sbjct 307 CTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGAT 366 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC---AAAG 102164 || | || ||| | | ||||||||| | ||||| | ||||||| | | | | Sbjct 367 ACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCAACCCGCGAGTG 426 Query 102165 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 ||| ||| || | ||||| || | || ||||| || ||||| ||||||||||| Sbjct 427 TCGTCGTACC----CGGAGCGTCTGCTGGCGTTTGCAGCCGTGGAGGGCATCTTCTTCTC 482 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 || || |||||| | || | |||||||||||||| || |||||||| || || |||| Sbjct 483 GGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTT 542 Query 102284 CTCCAACG 102291 ||| |||| Sbjct 543 CTCGAACG 550 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 102158 |||||| | || | || ||| | | ||||||||| | ||||| | ||||||| || Sbjct 3468 GCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGAC 3527 Query 102159 AC---AAAGTCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTAT 102214 | | |||| ||| || | ||||| || | || || || || |||||||| Sbjct 3528 CCGCGAGTGTCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCAGCCGTGGAGGGTAT 3583 Query 102215 CTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGG 102274 ||||||||| || || |||||| | || | |||||||||||||| || |||||||| || Sbjct 3584 CTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGG 3643 Query 102275 TCTCTGCTTCTCCAACG 102291 || ||||||| |||| Sbjct 3644 CCTGAGCTTCTCGAACG 3660 >seq66249 Length=1340 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 102158 |||||| | || | || ||| | | ||||||||| | ||||| | ||||||| || Sbjct 193 GCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGAC 134 Query 102159 AC---AAAGTCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTAT 102214 | | |||| ||| || | ||||| || | || || || || |||||||| Sbjct 133 CCGCGAGTGTCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCAGCCGTGGAGGGTAT 78 Query 102215 CTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGG 102274 ||||||||| || || |||||| | || | |||||||||||||| || |||||||| || Sbjct 77 CTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGG 18 Query 102275 TCTCTGCTTCTCCAACG 102291 || ||||||| |||| Sbjct 17 CCTGAGCTTCTCGAACG 1 >seq95307 Length=11489 Score = 89.7 bits (98), Expect = 6e-13 Identities = 120/166 (72%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 176912 TTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACC 176971 || ||||| | ||||||||||| |||| ||| | |||||||| | ||||| | || Sbjct 10114 TTACCACGCAACGGGAAGACACCATAGTAATCTCTGCCAACCACGGCAAGACCGCCCACA 10173 Query 176972 GCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACA---CTTGCCAGATTGT 177028 |||| || || || ||||| || || |||| ||| || || || ||||| | Sbjct 10174 GCGACGGTCTTGGCGGAATCTCCTTCCGTCAGGATCAGAGTGCAGTCCTTGC---TCTTC 10230 Query 177029 GCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAGTaa 177074 |||||||| || ||||| |||||||||| || || || ||||||| Sbjct 10231 GCCGTACCAGCGTTGTTGGCATCATCCAGCTTAGGGATGCCAGTAA 10276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619823127061280