Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq95307 91.5 2e-13 seq94487 82.4 9e-11 >seq95307 Length=11489 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/163 (73%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 |||||||| | || || || ||||| | |||||| || || |||| ||||| | ||| Sbjct 10114 TTACCACGCAACGGGAAGACACCATAGTAATCTCTGCCAACCACGGCAAGACCGCCCACA 10173 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGT--G 168547 |||| || || || ||||| || || |||| ||| || || || | || || | | Sbjct 10174 GCGACGGTCTTGGCGGAATCTCCTTCCGTCAGGATCAGAGTGCAGT--CCTTGCTCTTCG 10231 Query 168548 CCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGT 168590 |||||||||| ||||| ||||| |||| || ||||| ||||| Sbjct 10232 CCGTACCAGCGTTGTTGGCATCATCCAGCTTAGGGATGCCAGT 10274 >seq94487 Length=3660 Score = 82.4 bits (90), Expect = 9e-11 Identities = 118/165 (72%), Gaps = 5/165 (3%) Strand=Plus/Minus Query 119528 GATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGAT 119587 ||| ||||| || ||||| || ||||||||||| || | ||||| ||||| ||||| Sbjct 782 GATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGAT 723 Query 119588 GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 || || || || || |||||||| |||||||| ||||| || | |||||||| Sbjct 722 GGAGCAGAACGAGCCCGAGAAGAAGATACCCTCCACGGCTGCGAACGCCAGCAGACGCTC 663 Query 119648 AGCAAAAGGTCGAGACT----TGTCGAACCACTTGAGAGCCCAGT 119688 | | | ||| ||| |||| |||||||||| ||||||| Sbjct 662 CG-GGTACGACGACACTCGCGGGTCGCACCACTTGAGCGCCCAGT 619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588103770717200