Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq102828 98.7 6e-16 seq88141 96.9 2e-15 seq96335 89.7 3e-13 >seq102828 Length=2266 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || | || | || || ||||| || || || || Sbjct 1204 TCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAG 1263 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| || |||||| Sbjct 1264 ATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTG 1323 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || |||| || || || || ||||| || |||||||| Sbjct 1324 TCGATCGAGTCTGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACG 1383 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 1384 AAGATCTGCATA 1395 >seq88141 Length=1707 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || | || | || || ||||| || || ||||| Sbjct 926 TCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAG 867 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| || |||||| Sbjct 866 ATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTG 807 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || ||||| || |||||||| Sbjct 806 TCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACG 747 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 746 AAGATCTGCAT 736 >seq96335 Length=3561 Score = 89.7 bits (98), Expect = 3e-13 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || || || || Sbjct 1058 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAG 999 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| || |||||| Sbjct 998 ATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTG 939 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || |||| || || || || ||||| | |||||||| Sbjct 938 TCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCANNGTCTTCACG 879 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 878 AAGATCTGCAT 868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324164860936272